Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LILAB_RS40985 Genome accession   NC_015711
Coordinates   435741..436673 (-) Length   310 a.a.
NCBI ID   WP_123784023.1    Uniprot ID   -
Organism   Corallococcus macrosporus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430741..441673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILAB_RS01770 (LILAB_01805) - 431337..431888 (-) 552 WP_043709022.1 GNAT family N-acetyltransferase -
  LILAB_RS01775 (LILAB_01810) - 432009..432419 (+) 411 WP_013935464.1 hypothetical protein -
  LILAB_RS01780 (LILAB_01815) - 432570..432863 (+) 294 WP_043712281.1 hypothetical protein -
  LILAB_RS01785 (LILAB_01820) - 433078..435306 (-) 2229 WP_043709023.1 alkaline phosphatase D family protein -
  LILAB_RS40980 - 435473..435856 (-) 384 Protein_365 DNA recombination/repair protein RecA -
  LILAB_RS40985 recA 435741..436673 (-) 933 WP_123784023.1 recombinase RecA Machinery gene
  LILAB_RS01800 (LILAB_01835) - 436786..437748 (-) 963 WP_043709027.1 hypothetical protein -
  LILAB_RS01805 (LILAB_01840) - 437816..438421 (+) 606 WP_013935468.1 RNA polymerase sigma factor -
  LILAB_RS01810 (LILAB_01845) - 438418..438894 (+) 477 WP_013935469.1 anti-sigma factor family protein -
  LILAB_RS01815 (LILAB_01850) - 438891..439388 (+) 498 WP_013935470.1 DUF3106 domain-containing protein -
  LILAB_RS01820 (LILAB_01855) - 439385..439630 (+) 246 WP_013935471.1 hypothetical protein -
  LILAB_RS01825 (LILAB_01860) glmS 439717..441552 (-) 1836 WP_013935472.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 33851.46 Da        Isoelectric Point: 7.1061

>NTDB_id=41586 LILAB_RS40985 WP_123784023.1 435741..436673(-) (recA) [Corallococcus macrosporus]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSQTCVIFINQIRMKIGVMFGNPETTTAAPPADGHHRQEPDVRHLHQPDPHEDW
RDVRQPGDHDGRQRAEVLRVPAPGHPPHRRHQEWRQRGGQPHPREGGEEQGRAAVQGSRVRHHVRHGHLP

Nucleotide


Download         Length: 933 bp        

>NTDB_id=41586 LILAB_RS40985 WP_123784023.1 435741..436673(-) (recA) [Corallococcus macrosporus]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGAGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTCGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCGGAAGCGCAGAAGCGTGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCGCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACCACGACGG
CCGCTCCGCCAGCTGACGGGCACCATCGCCAAGAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGG
CGTGATGTTCGGCAACCCGGAGACCACGACGGGCGGCAACGCGCTGAAGTTCTACGCGTCCCAGCGCCTGGACATCCGCC
GCATCGGCGCCATCAAGAATGGCGACAACGTGGTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCG
CCGTTCAAGGAAGTCGAGTTCGACATCATGTACGGCACGGGCATCTCCCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

53.819

92.903

0.5
  recA Helicobacter pylori 26695

53.472

92.903

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.087

74.194

0.49
  recA Acinetobacter baumannii D1279779

64.069

74.516

0.477
  recA Pseudomonas stutzeri DSM 10701

63.913

74.194

0.474
  recA Acinetobacter baylyi ADP1

63.636

74.516

0.474
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.877

73.226

0.468
  recA Vibrio cholerae strain A1552

63.877

73.226

0.468
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.504

76.774

0.465
  recA Neisseria gonorrhoeae strain FA1090

62.996

73.226

0.461
  recA Neisseria gonorrhoeae MS11

62.996

73.226

0.461
  recA Neisseria gonorrhoeae MS11

62.996

73.226

0.461
  recA Ralstonia pseudosolanacearum GMI1000

66.822

69.032

0.461
  recA Bacillus subtilis subsp. subtilis str. 168

60.684

75.484

0.458
  recA Glaesserella parasuis strain SC1401

63.111

72.581

0.458
  recA Streptococcus mitis NCTC 12261

58.996

77.097

0.455
  recA Streptococcus mitis SK321

58.996

77.097

0.455
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

66.774

0.445
  recA Streptococcus pyogenes NZ131

57.806

76.452

0.442
  recA Streptococcus pneumoniae Rx1

65.217

66.774

0.435
  recA Streptococcus pneumoniae D39

65.217

66.774

0.435
  recA Streptococcus pneumoniae R6

65.217

66.774

0.435
  recA Streptococcus pneumoniae TIGR4

65.217

66.774

0.435
  recA Streptococcus mutans UA159

59.375

72.258

0.429
  recA Lactococcus lactis subsp. cremoris KW2

58.929

72.258

0.426
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.965

72.903

0.423

Multiple sequence alignment