Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LILAB_RS01500 Genome accession   NC_015711
Coordinates   362263..363288 (+) Length   341 a.a.
NCBI ID   WP_013935411.1    Uniprot ID   -
Organism   Corallococcus macrosporus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 357263..368288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILAB_RS01485 (LILAB_01515) - 357721..358395 (-) 675 WP_043709000.1 hypothetical protein -
  LILAB_RS01490 (LILAB_01520) - 358594..360555 (+) 1962 WP_123784022.1 ATP-binding protein -
  LILAB_RS01495 (LILAB_01525) - 360572..361957 (-) 1386 WP_043709002.1 NAD(P)/FAD-dependent oxidoreductase -
  LILAB_RS01500 (LILAB_01530) recA 362263..363288 (+) 1026 WP_013935411.1 recombinase RecA Machinery gene
  LILAB_RS01505 (LILAB_01535) - 363285..363785 (-) 501 WP_013935412.1 DUF1285 domain-containing protein -
  LILAB_RS01510 (LILAB_01540) - 363843..365354 (-) 1512 WP_043709006.1 hypothetical protein -
  LILAB_RS01515 (LILAB_01545) - 365351..366616 (-) 1266 WP_013935414.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LILAB_RS01520 (LILAB_01550) pssA 366728..367594 (-) 867 WP_013935415.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 35940.19 Da        Isoelectric Point: 7.5192

>NTDB_id=41575 LILAB_RS01500 WP_013935411.1 362263..363288(+) (recA) [Corallococcus macrosporus]
MSKLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAREQKVAVIPTGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQPDTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVV
GSRARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSHFSLRGERIGQGRERAAEWLREHPEVLES
LGKELTGASPPSPPAAVEAAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=41575 LILAB_RS01500 WP_013935411.1 362263..363288(+) (recA) [Corallococcus macrosporus]
ATGAGCAAGCTGGCGGAGAAGCTGAAGGCGGTGGCGGCGGCGGTGGCGAGCATCGAGAAGCAGTTCGGACGTGGCTCGGT
GATGACCTTGGGCGGCGAGGCCCGCGAACAGAAGGTGGCCGTCATCCCCACTGGCTCGGTGGGGGTGGACCGGGCACTGG
GCGTGGGCGGCTACCCGCGAGGGCGCGTGGTGGAAGTCTTTGGCAATGAGTCCTCGGGCAAGACGACCCTCACCCTGCAC
GCGATTGCGCAAGTGCAGGCGGCGGGCGGCGTGGCGGCGTTCATCGACGCGGAGCACGCGCTGGACGTGTCCTACGCGCG
CAAGCTGGGCGTCCGCGTGGAGGAGCTGCTCGTGTCACAGCCCGACACGGGCGAACAGGCCCTGGAAATCACCGAGCACC
TGGTGCGCTCCGGAGCCGTGGACCTCATCGTCGTCGACTCCGTGGCGGCCCTGGTCCCGCGGGCTGAAATCGAGGGGGAG
ATGGGAGACGCGCACATGGGTGTCCAGGCGCGGCTGATGAGTCAGGCGCTGCGCAAGTTGACGGGCGCGGTGAGCCGGTC
GGGCACGTGCATCATCTTCATCAACCAGATTCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACCGGCG
GTAACGCCCTGAAGTTCTACGCGTCGGTGCGCATGGAGATTCGCCGCACGGGCAACATCAAGGACGGGGACGCGGTGGTC
GGCTCGCGGGCGCGGGTGAAGGTGGTGAAGAACAAGGTGGCCCCGCCCTTCCAGGAAGCGGAGTTCGACCTGATGTACGG
CAGCGGCATCCACCGCGTGGGCGAGGTGCTCGACCTGGGCGTGGCCACGGGCCTCATCGAGAAGTCAGGAAGCCACTTCA
GCCTCCGCGGGGAGCGCATCGGGCAGGGCCGCGAGCGCGCCGCCGAGTGGCTGCGCGAGCATCCGGAGGTGCTGGAGTCC
CTTGGCAAGGAGCTCACCGGCGCCTCCCCGCCTTCTCCTCCGGCGGCGGTGGAGGCCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.477

96.481

0.651
  recA Pseudomonas stutzeri DSM 10701

63.05

100

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.204

93.548

0.61
  recA Vibrio cholerae strain A1552

65.204

93.548

0.61
  recA Glaesserella parasuis strain SC1401

61.607

98.534

0.607
  recA Neisseria gonorrhoeae MS11

64.873

92.669

0.601
  recA Neisseria gonorrhoeae MS11

64.873

92.669

0.601
  recA Neisseria gonorrhoeae strain FA1090

64.873

92.669

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

63.175

92.375

0.584
  recA Acinetobacter baylyi ADP1

63.987

91.202

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.682

94.135

0.581
  recA Acinetobacter baumannii D1279779

61.755

93.548

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.321

93.255

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

62.179

91.496

0.569
  recA Helicobacter pylori 26695

59.317

94.428

0.56
  recA Helicobacter pylori strain NCTC11637

59.317

94.428

0.56
  recA Streptococcus pneumoniae R6

58.154

95.308

0.554
  recA Streptococcus pneumoniae Rx1

58.154

95.308

0.554
  recA Streptococcus pneumoniae D39

58.154

95.308

0.554
  recA Streptococcus pneumoniae TIGR4

58.154

95.308

0.554
  recA Lactococcus lactis subsp. cremoris KW2

57.012

96.188

0.548
  recA Streptococcus mitis SK321

58.491

93.255

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.425

91.789

0.545
  recA Streptococcus pyogenes NZ131

57.099

95.015

0.543
  recA Streptococcus mitis NCTC 12261

57.632

94.135

0.543
  recA Streptococcus mutans UA159

57.188

93.842

0.537

Multiple sequence alignment