Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RUNSL_RS15645 Genome accession   NC_015703
Coordinates   3719801..3720859 (+) Length   352 a.a.
NCBI ID   WP_013928873.1    Uniprot ID   A0A7U3ZLU3
Organism   Runella slithyformis DSM 19594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3714801..3725859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUNSL_RS29600 (Runsl_3179) - 3714879..3715265 (-) 387 WP_013928865.1 helix-turn-helix domain-containing protein -
  RUNSL_RS15615 (Runsl_3181) coaE 3715598..3716185 (-) 588 WP_013928867.1 dephospho-CoA kinase -
  RUNSL_RS15620 (Runsl_3182) - 3716269..3717042 (-) 774 WP_013928868.1 hypothetical protein -
  RUNSL_RS15625 (Runsl_3183) yajC 3717128..3717439 (-) 312 WP_013928869.1 preprotein translocase subunit YajC -
  RUNSL_RS15630 (Runsl_3184) - 3717479..3717919 (-) 441 WP_013928870.1 DUF1573 domain-containing protein -
  RUNSL_RS15635 (Runsl_3185) - 3717932..3718234 (-) 303 WP_013928871.1 YtxH domain-containing protein -
  RUNSL_RS15640 (Runsl_3186) nusB 3718298..3719470 (-) 1173 WP_013928872.1 transcription antitermination factor NusB -
  RUNSL_RS15645 (Runsl_3187) recA 3719801..3720859 (+) 1059 WP_013928873.1 recombinase RecA Machinery gene
  RUNSL_RS15650 (Runsl_3188) - 3721313..3722452 (-) 1140 WP_013928874.1 acyl-CoA dehydrogenase family protein -
  RUNSL_RS15655 (Runsl_3189) - 3722852..3724168 (+) 1317 WP_013928875.1 UDP-glucose/GDP-mannose dehydrogenase family protein -
  RUNSL_RS15660 (Runsl_3190) - 3724175..3725146 (+) 972 WP_013928876.1 UDP-glucuronic acid decarboxylase family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38295.95 Da        Isoelectric Point: 5.0864

>NTDB_id=41553 RUNSL_RS15645 WP_013928873.1 3719801..3720859(+) (recA) [Runella slithyformis DSM 19594]
MADNKEQKFKALQTTLEKLDKAYGKGTVMRLSDKKVMDVEVISTGSVGLDLALGIGGLPRGRVVEIYGPESSGKTTLAMH
CIAEAQKAGGLAAFIDAEHAFDRTYAQKLGIDTQNLLISQPDNGEQALEIAEHLISSGAIDIIVIDSVAALVPKAEIEGE
MGDSKMGLQARLMSQALRKLTGVINRTNCCCIFINQLRDKIGVMFGSPETTTGGNALKYYASVRLDIRRIGQIKESADNI
TGNRTKVKVVKNKLAPPFKVIEFDIMYGEGISKVGEIIDLAVELEIVKKSGSWFSYDGNRLSQGRDAVKQLLKDNPELTE
ELEAKIRAKVNEDENALIDTLEPNIVDDGKPE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=41553 RUNSL_RS15645 WP_013928873.1 3719801..3720859(+) (recA) [Runella slithyformis DSM 19594]
ATGGCAGACAACAAAGAACAGAAGTTTAAAGCCCTGCAGACAACACTTGAGAAGCTGGATAAAGCCTATGGAAAAGGCAC
CGTGATGCGTCTCAGTGACAAAAAAGTAATGGACGTGGAAGTCATTTCAACGGGTTCCGTTGGGCTGGACTTAGCGTTAG
GAATCGGCGGATTGCCACGCGGACGGGTCGTTGAAATCTATGGCCCTGAATCATCAGGAAAAACCACGCTGGCCATGCAC
TGCATAGCCGAAGCACAAAAAGCCGGCGGCTTGGCAGCATTCATTGATGCCGAGCACGCGTTTGACCGTACTTACGCCCA
AAAATTAGGGATTGATACGCAAAATTTATTGATTTCACAGCCCGATAACGGTGAACAGGCTCTCGAAATTGCCGAACATC
TGATTTCCTCCGGTGCCATTGACATCATCGTGATCGACTCTGTCGCCGCGCTGGTGCCGAAGGCCGAAATCGAAGGTGAA
ATGGGGGACAGCAAAATGGGTTTACAGGCCCGTTTGATGTCGCAGGCATTACGTAAGCTGACCGGGGTAATCAACCGGAC
TAACTGCTGTTGTATCTTTATCAACCAGTTGCGTGATAAAATCGGGGTTATGTTCGGAAGTCCTGAAACAACCACCGGCG
GTAACGCGTTGAAATACTACGCATCGGTGCGTTTGGATATCCGCCGTATCGGTCAGATTAAGGAAAGCGCTGACAATATT
ACCGGTAACCGTACCAAAGTGAAAGTGGTGAAAAATAAACTGGCACCGCCGTTTAAGGTCATCGAATTTGATATCATGTA
CGGAGAAGGTATCTCTAAAGTGGGCGAGATCATTGACTTAGCGGTCGAATTGGAGATCGTTAAAAAATCCGGTTCATGGT
TTAGCTACGATGGTAATCGCCTGTCGCAGGGACGTGATGCCGTGAAACAGTTGCTGAAAGATAATCCGGAACTGACCGAA
GAACTGGAAGCCAAAATTCGGGCCAAAGTCAACGAAGATGAAAATGCGCTCATCGATACCCTTGAGCCAAACATCGTGGA
TGATGGTAAACCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3ZLU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.205

94.034

0.679
  recA Acinetobacter baylyi ADP1

66.364

93.75

0.622
  recA Acinetobacter baumannii D1279779

66.154

92.33

0.611
  recA Ralstonia pseudosolanacearum GMI1000

69.256

87.784

0.608
  recA Glaesserella parasuis strain SC1401

62.763

94.602

0.594
  recA Helicobacter pylori 26695

61.652

96.307

0.594
  recA Helicobacter pylori strain NCTC11637

61.652

96.307

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

93.182

0.588
  recA Neisseria gonorrhoeae MS11

62.918

93.466

0.588
  recA Neisseria gonorrhoeae MS11

62.918

93.466

0.588
  recA Neisseria gonorrhoeae strain FA1090

62.918

93.466

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.767

97.443

0.582
  recA Vibrio cholerae strain A1552

59.767

97.443

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

61.89

93.182

0.577
  recA Pseudomonas stutzeri DSM 10701

62.154

92.33

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.559

91.477

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

59.877

92.045

0.551
  recA Streptococcus mitis NCTC 12261

54.494

100

0.551
  recA Streptococcus mitis SK321

54.494

100

0.551
  recA Streptococcus pyogenes NZ131

58.41

92.898

0.543
  recA Streptococcus mutans UA159

57.187

92.898

0.531
  recA Streptococcus pneumoniae Rx1

57.362

92.614

0.531
  recA Streptococcus pneumoniae D39

57.362

92.614

0.531
  recA Streptococcus pneumoniae R6

57.362

92.614

0.531
  recA Streptococcus pneumoniae TIGR4

57.362

92.614

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.098

93.182

0.523

Multiple sequence alignment