Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GTK47_RS16970 Genome accession   NZ_CP047639
Coordinates   3673834..3674904 (-) Length   356 a.a.
NCBI ID   WP_075672409.1    Uniprot ID   A0A6G6TKI3
Organism   Proteus sp. ZN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3668834..3679904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK47_RS16960 (GTK47_16905) csrA 3669888..3670076 (-) 189 WP_004244778.1 carbon storage regulator CsrA -
  GTK47_RS16965 (GTK47_16910) alaS 3670298..3672925 (-) 2628 WP_165125360.1 alanine--tRNA ligase -
  GTK47_RS16970 (GTK47_16915) recA 3673834..3674904 (-) 1071 WP_075672409.1 recombinase RecA Machinery gene
  GTK47_RS16975 (GTK47_16920) pncC 3675012..3675518 (-) 507 WP_165125363.1 nicotinamide-nucleotide amidase -
  GTK47_RS16980 (GTK47_16925) lplT 3675555..3676754 (-) 1200 WP_165125366.1 lysophospholipid transporter LplT -
  GTK47_RS16985 (GTK47_16930) aas 3676754..3678913 (-) 2160 WP_165125369.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  GTK47_RS16990 (GTK47_16935) aroL 3679017..3679529 (-) 513 WP_165125372.1 shikimate kinase AroL -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38386.70 Da        Isoelectric Point: 4.9725

>NTDB_id=414800 GTK47_RS16970 WP_075672409.1 3673834..3674904(-) (recA) [Proteus sp. ZN5]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMNVETISTGSLSLDVALGAGGLPRGRIVEIYGPESSGKTTLTLQV
IAAAQREGKICAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYDEL
NTKLREMLLNHAGEFTSAADFTNNSDDAADIEEKEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=414800 GTK47_RS16970 WP_075672409.1 3673834..3674904(-) (recA) [Proteus sp. ZN5]
ATGGCTATTGATGAAAACAAACAAAAAGCATTGGCCGCAGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGGTCTAT
CATGCGTCTGGGTGAAGATCGTTCCATGAACGTTGAAACCATCTCTACGGGTTCTTTATCATTAGACGTTGCTTTAGGTG
CTGGTGGTTTACCACGTGGTCGTATTGTTGAAATCTATGGCCCAGAATCTTCTGGTAAAACTACGTTAACTCTACAAGTT
ATCGCAGCTGCTCAACGTGAAGGCAAAATTTGTGCATTTATCGATGCTGAGCACGCTTTAGATCCTATCTATGCTAAAAA
ACTGGGCGTAGATATTGATAACCTGCTGTGTTCTCAGCCTGATACTGGTGAACAAGCCTTAGAAATTTGTGATGCATTAT
CTCGTTCTGGTGCTGTTGATGTTATCGTTGTTGACTCCGTTGCCGCTTTAACACCAAAAGCAGAAATCGAAGGCGAAATT
GGTGATTCACACGTTGGTTTAGCGGCTCGTATGATGAGCCAAGCTATGCGTAAATTAGCGGGTAACCTGAAAAACTCCAA
CACATTACTTATTTTCATCAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAACCCAGAAACCACAACAGGCGGTA
ATGCACTTAAATTCTACGCTTCTGTTCGCTTAGATATTCGTCGTATCGGTTCTGTTAAAAACGGCGATGAAGTTGTTGGT
AGTGAAACTCGCGTTAAAGTAGTGAAAAACAAAATTGCAGCGCCATTTAAACAAGCTGAATTCCAAATTATGTATGGCGA
AGGTATTAATACCTTTGGCGAACTGATTGATTTAGGTGTTAAACATAAATTGGTAGAGAAAGCGGGAGCATGGTACAGCT
ACAATGGTGAGAAAATTGGTCAAGGTAAAGCCAATGCAACAACTTACCTAAAAGAACACCCTGAAATGTACGATGAGTTA
AATACTAAATTACGTGAAATGTTATTAAATCATGCTGGCGAATTTACTAGCGCAGCTGATTTTACTAACAATAGCGATGA
TGCGGCAGATATTGAAGAAAAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6TKI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.216

96.348

0.792
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.216

96.348

0.792
  recA Pseudomonas stutzeri DSM 10701

75.229

91.854

0.691
  recA Acinetobacter baylyi ADP1

70.435

96.91

0.683
  recA Acinetobacter baumannii D1279779

68.644

99.438

0.683
  recA Glaesserella parasuis strain SC1401

67.33

98.876

0.666
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.573

0.635
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.36

0.624
  recA Streptococcus pneumoniae TIGR4

61.739

96.91

0.598
  recA Streptococcus pneumoniae Rx1

61.739

96.91

0.598
  recA Streptococcus pneumoniae D39

61.739

96.91

0.598
  recA Streptococcus pneumoniae R6

61.739

96.91

0.598
  recA Helicobacter pylori 26695

63.609

91.854

0.584
  recA Helicobacter pylori strain NCTC11637

63.303

91.854

0.581
  recA Lactococcus lactis subsp. cremoris KW2

63.385

91.292

0.579
  recA Streptococcus mitis NCTC 12261

63.467

90.73

0.576
  recA Streptococcus mitis SK321

63.158

90.73

0.573
  recA Streptococcus pyogenes NZ131

62.769

91.292

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.169

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.011

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.292

0.567
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

92.978

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.169

0.539

Multiple sequence alignment