Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GU334_RS01340 Genome accession   NZ_CP047628
Coordinates   267883..269055 (+) Length   390 a.a.
NCBI ID   WP_061773709.1    Uniprot ID   A0A2A5SIC7
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262883..274055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS01320 (GU334_01320) hslO 263430..264290 (-) 861 WP_096039950.1 Hsp33 family molecular chaperone HslO -
  GU334_RS01325 (GU334_01325) - 264479..264919 (+) 441 WP_061773706.1 DUF1810 domain-containing protein -
  GU334_RS01330 (GU334_01330) - 265394..266827 (-) 1434 WP_096039951.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  GU334_RS01335 (GU334_01335) mutM 266928..267761 (+) 834 WP_167839697.1 DNA-formamidopyrimidine glycosylase -
  GU334_RS01340 (GU334_01340) recA 267883..269055 (+) 1173 WP_061773709.1 recombinase RecA Machinery gene
  GU334_RS01345 (GU334_01345) spx 269234..269632 (+) 399 WP_061773710.1 transcriptional regulator Spx -
  GU334_RS01350 (GU334_01350) - 270133..270351 (-) 219 WP_337250389.1 CsbD family protein -
  GU334_RS01355 (GU334_01355) - 270879..271649 (+) 771 WP_167841006.1 TatD family hydrolase -
  GU334_RS01360 (GU334_01360) rnmV 271642..272214 (+) 573 WP_061773713.1 ribonuclease M5 -
  GU334_RS01365 (GU334_01365) rsmA 272205..273077 (+) 873 WP_061773714.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  GU334_RS01370 (GU334_01370) - 273109..273552 (-) 444 WP_061773715.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 41815.83 Da        Isoelectric Point: 5.2830

>NTDB_id=414673 GU334_RS01340 WP_061773709.1 267883..269055(+) (recA) [Lactococcus raffinolactis strain Lr_19_14]
MAKKAKKNLDDITKKFGDEREKALNDALKVIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GNTQIKGTGDDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFSYNDEKIGQGS
EKAKLYLKEHPEVFAEIDHKVREKFGLIAGETTEGQTEEKAATKSSKAKKETAAESELVSLELDTIEIEE

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=414673 GU334_RS01340 WP_061773709.1 267883..269055(+) (recA) [Lactococcus raffinolactis strain Lr_19_14]
TTGGCAAAAAAAGCTAAGAAAAATTTAGATGATATTACGAAAAAATTTGGTGATGAGCGTGAGAAAGCCCTCAATGATGC
CCTGAAAGTGATTGAAAAAGACTTCGGTAAAGGCGCTTTGATGCGTCTGGGTGATAAAGCAGAGCAAAAAGTTCAAGTCA
TGAGCTCGGGTTCTTTGGCGCTCGATATTGCTTTGGGTGTTGGTGGTTATCCTAAGGGGCGGATCATCGAAATCTACGGC
CCAGAATCATCAGGTAAAACAACAGTTGCCCTTCACGCCGTGGCGCAAGCCCAAAAAGAAGGCGGTATTGCAGCCTTTAT
CGATGCGGAACATGCGCTTGATCCTGCTTACGCGGCAGCGCTTGGTGTCAACATTGATGAGCTTTTGCTCTCTCAACCAG
ATTCTGGTGAACAAGGCCTTGAGATTGCCGGTAAATTGATTGACTCAGGTGCCATTGACCTGGTTGTTATCGACTCAGTG
GCAGCCCTTGTCCCACGTGCCGAAATCGATGGTGAAATCGGTGATTCTCACGTTGGTTTGCAAGCACGGATGATGTCACA
AGCCATGCGTAAACTATCAGCATCCATTAATAAAACTAAAACAATCGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTCGGTAGTCCGGAAACAACACCTGGTGGTCGTGCCCTGAAATTCTACGCGTCTGTTCGTTTAGATGTCCGT
GGTAACACACAAATTAAAGGTACTGGTGATGATAAAGACACTGCGATGGGTAAAGAAACGAAAATCAAAGTCGTGAAAAA
CAAGGTGGCACCACCCTTTAAAGTTGCAGAAGTTGAAATCATGTTCGGTGAAGGGATTTCTCAGACAGGCGAATTGGTTA
AAATTGCAACTGACTTGGATATCATCAAAAAATCTGGCGCTTGGTTCTCTTATAACGATGAAAAGATCGGTCAAGGTTCT
GAAAAAGCTAAACTTTACCTGAAAGAACATCCAGAAGTATTTGCTGAAATCGACCACAAAGTGCGTGAAAAATTTGGTTT
GATTGCAGGGGAAACAACTGAAGGACAAACTGAAGAAAAAGCAGCGACTAAATCATCCAAAGCGAAAAAAGAAACAGCAG
CAGAATCTGAATTGGTATCGCTTGAGTTGGACACGATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5SIC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

83.59

100

0.836
  recA Streptococcus pneumoniae Rx1

83.59

100

0.836
  recA Streptococcus pneumoniae TIGR4

83.59

100

0.836
  recA Streptococcus pneumoniae D39

83.59

100

0.836
  recA Streptococcus mitis SK321

82.234

100

0.831
  recA Streptococcus mitis NCTC 12261

81.98

100

0.828
  recA Streptococcus mutans UA159

81.17

100

0.818
  recA Streptococcus pyogenes NZ131

89.595

88.718

0.795
  recA Lactococcus lactis subsp. cremoris KW2

81.948

89.487

0.733
  recA Latilactobacillus sakei subsp. sakei 23K

69.394

84.615

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

84.359

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.877

87.436

0.541
  recA Neisseria gonorrhoeae strain FA1090

60.641

87.949

0.533
  recA Neisseria gonorrhoeae MS11

60.641

87.949

0.533
  recA Neisseria gonorrhoeae MS11

60.641

87.949

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

85.128

0.531
  recA Acinetobacter baylyi ADP1

59.531

87.436

0.521
  recA Acinetobacter baumannii D1279779

60.976

84.103

0.513
  recA Vibrio cholerae strain A1552

60.123

83.59

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

83.59

0.503
  recA Glaesserella parasuis strain SC1401

57.143

87.949

0.503
  recA Helicobacter pylori 26695

59.394

84.615

0.503
  recA Helicobacter pylori strain NCTC11637

59.394

84.615

0.503
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

84.872

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.282

0.487
  recA Pseudomonas stutzeri DSM 10701

56.716

85.897

0.487

Multiple sequence alignment