Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GRX76_RS09280 Genome accession   NZ_CP047569
Coordinates   2256487..2257518 (+) Length   343 a.a.
NCBI ID   WP_160153062.1    Uniprot ID   -
Organism   Microbulbifer sp. ALW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251487..2262518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRX76_RS09255 recJ 2251851..2253581 (+) 1731 WP_160153057.1 single-stranded-DNA-specific exonuclease RecJ -
  GRX76_RS09260 - 2253655..2254566 (+) 912 WP_160153058.1 DMT family transporter -
  GRX76_RS09265 - 2254584..2255210 (+) 627 WP_160153059.1 LysE family translocator -
  GRX76_RS09270 - 2255246..2255749 (+) 504 WP_160153060.1 hypothetical protein -
  GRX76_RS09275 - 2255784..2256317 (+) 534 WP_236250611.1 CinA family protein -
  GRX76_RS09280 recA 2256487..2257518 (+) 1032 WP_160153062.1 recombinase RecA Machinery gene
  GRX76_RS09285 - 2257521..2258099 (+) 579 WP_236250612.1 regulatory protein RecX -
  GRX76_RS09290 - 2258357..2259106 (+) 750 WP_160153063.1 DUF969 domain-containing protein -
  GRX76_RS09295 - 2259109..2260056 (+) 948 WP_201276946.1 DUF979 domain-containing protein -
  GRX76_RS09300 pcp 2260053..2260688 (+) 636 WP_201276947.1 pyroglutamyl-peptidase I -
  GRX76_RS09305 glpK 2260812..2262296 (+) 1485 WP_160153065.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36973.28 Da        Isoelectric Point: 5.0508

>NTDB_id=414219 GRX76_RS09280 WP_160153062.1 2256487..2257518(+) (recA) [Microbulbifer sp. ALW1]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKGRERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
THVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLLGEIVDYGVKLGLIDKAGAWYSYKGDKIGQGKANAVKFLKENTDIRNEIEG
QLRAQLLEDVAPAQPEELEAAED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=414219 GRX76_RS09280 WP_160153062.1 2256487..2257518(+) (recA) [Microbulbifer sp. ALW1]
ATGGATTCCAACAAAGACAAAGCTTTACAGGCGGCGCTGTCACAGATCGAGCGCCAGTTCGGCAAGGGCACCGTCATGCG
CATGGGGGATAAGGGCCGTGAGCGTATCCCCGCGATTTCTACCGGCTCCCTCGGGCTGGATGTCGCCCTCGGTATTGGCG
GCCTGCCTCGCGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTTACCCTGCAGGTAATCGCC
GAGGCTCAGCGCAAGGGCGGCACCTGTGCCTTCGTGGATGCGGAGCACGCGCTGGATCCAATCTATGCCGAAAAGCTCGG
TGTCAATGTGGACGAGCTGATCGTATCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAGTGGCCGATATGCTGGTGCGCT
CCGGTGCGGTTGACGTGCTGGTCGTGGACTCCGTAGCGGCCCTGACCCCGCGTGCGGAAATCGAAGGTGAAATGGGTGAT
ACCCACGTTGGCTTGCAAGCGCGTTTGATGTCTCAGGCCCTGCGCAAGCTGACCGGTAATATCAAGAACACTAATACCCT
GTGCGTGTTCATCAACCAGATCCGGATGAAAATCGGGGTGATGTTTGGCTCCCCGGAAACCACTACCGGCGGTAACGCGC
TCAAGTTCTACTCCTCTGTTCGCCTGGACATCCGTCGCATCGGCTCTGTGAAAGAGGGCGATGAGGTGGTGGGCAACGAA
ACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCTCCACCCTTCAAGCAGACCGAGTTCCAGATCATGTACGGCCAGGGTAT
CAACCTGCTGGGTGAAATTGTCGACTACGGCGTGAAGTTGGGGCTGATTGACAAGGCTGGCGCCTGGTATAGCTACAAAG
GCGACAAGATTGGTCAGGGTAAGGCCAATGCGGTGAAATTCCTGAAGGAAAATACCGATATTCGCAATGAAATCGAAGGC
CAACTGCGTGCGCAGTTGCTGGAAGATGTCGCACCGGCACAGCCTGAAGAGCTGGAAGCTGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.843

100

0.778
  recA Acinetobacter baylyi ADP1

74.006

95.335

0.706
  recA Acinetobacter baumannii D1279779

74.006

95.335

0.706
  recA Vibrio cholerae strain A1552

73.394

95.335

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

95.335

0.7
  recA Neisseria gonorrhoeae MS11

72.308

94.752

0.685
  recA Neisseria gonorrhoeae MS11

72.308

94.752

0.685
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.752

0.685
  recA Glaesserella parasuis strain SC1401

71.118

93.878

0.668
  recA Ralstonia pseudosolanacearum GMI1000

72.347

90.671

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.771

93.003

0.621
  recA Helicobacter pylori strain NCTC11637

61.449

100

0.618
  recA Helicobacter pylori 26695

61.449

100

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

61.584

99.417

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

93.586

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

96.501

0.601
  recA Streptococcus mutans UA159

60.615

94.752

0.574
  recA Streptococcus pneumoniae Rx1

59.756

95.627

0.571
  recA Streptococcus mitis NCTC 12261

59.756

95.627

0.571
  recA Streptococcus pneumoniae D39

59.756

95.627

0.571
  recA Streptococcus pneumoniae R6

59.756

95.627

0.571
  recA Streptococcus pneumoniae TIGR4

59.756

95.627

0.571
  recA Streptococcus mitis SK321

59.451

95.627

0.569
  recA Streptococcus pyogenes NZ131

58.951

94.461

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

94.169

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.057

97.085

0.554

Multiple sequence alignment