Detailed information NTG0041358

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: RTA_RS19155
• Genome accession: NC_015677
• Coordinates: 3988305..3989357 (-)
• Length: 350 a.a.
• NCBI ID: WP_013903088.1
• Uniprot ID: F5Y292
• Organism: Ramlibacter tataouinensis TTB310
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3983305..3994357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTA_RS19130 (Rta_37400)	-	3983953..3984663 (-)	711	WP_041676608.1	TerC family protein	-
RTA_RS19135 (Rta_37410)	sucD	3984680..3985573 (-)	894	WP_013903084.1	succinate--CoA ligase subunit alpha	-
RTA_RS19140 (Rta_37420)	sucC	3985584..3986750 (-)	1167	WP_013903085.1	ADP-forming succinate--CoA ligase subunit beta	-
RTA_RS19145 (Rta_37430)	argC	3986908..3987825 (+)	918	WP_013903086.1	N-acetyl-gamma-glutamyl-phosphate reductase	-
RTA_RS19150 (Rta_37440)	recX	3987834..3988298 (-)	465	WP_013903087.1	recombination regulator RecX	-
RTA_RS19155 (Rta_37450)	recA	3988305..3989357 (-)	1053	WP_013903088.1	recombinase RecA	Machinery gene
RTA_RS19160 (Rta_37460)	-	3989499..3989969 (+)	471	WP_041675774.1	MarR family winged helix-turn-helix transcriptional regulator	-
RTA_RS19165 (Rta_37470)	-	3990022..3990696 (+)	675	WP_013903090.1	response regulator transcription factor	-
RTA_RS19170 (Rta_37480)	-	3990702..3992201 (+)	1500	WP_013903091.1	sensor histidine kinase	-
RTA_RS19175 (Rta_37490)	-	3992186..3992845 (-)	660	WP_013903092.1	glutathione S-transferase family protein	-
RTA_RS19180 (Rta_37500)	-	3992871..3993524 (-)	654	WP_013903093.1	SPOR domain-containing protein	-
RTA_RS19185 (Rta_37510)	-	3993540..3994322 (-)	783	WP_013903094.1	biotin--[acetyl-CoA-carboxylase] ligase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37751.32 Da
• Isoelectric Point: 5.2021

>NTDB_id=41358 RTA_RS19155 WP_013903088.1 3988305..3989357(-) (recA) [Ramlibacter tataouinensis TTB310]
MDAQVKGTRIAGDTEKNKALQAALAQIEKQFGKGTIMRLGEGEKLEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPES
SGKTTLTLQVIAEMQRQAGQCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTG
TIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISRHGEIIDMGVTARILEKSGAWYAYNGEKIGQGRDNAREFL
RENPELAREIENKVRESLGIPLLPADAEAE

Nucleotide

• Length: 1053 bp

>NTDB_id=41358 RTA_RS19155 WP_013903088.1 3988305..3989357(-) (recA) [Ramlibacter tataouinensis TTB310]
ATGGATGCACAAGTCAAGGGTACCCGGATCGCCGGCGACACCGAAAAGAACAAGGCCCTGCAGGCGGCATTGGCCCAGAT
CGAGAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGAAGCTGGAGGACATCCAGGTCGTGTCCACCG
GCTCGCTGGGCCTGGACATCGCCCTGGGCGTGGGTGGCCTGCCGCGCGGCCGGGTGATCGAGATCTACGGCCCGGAATCC
TCGGGCAAGACCACGCTGACCCTGCAGGTCATCGCCGAGATGCAGCGCCAGGCCGGCCAGTGCGCCTTCGTCGACGCCGA
GCACGCGCTGGACGTGCAGTACGCGCAGAAGCTGGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCGGACACCGGCG
AACAGGCCTTGGAGATCGTGGATTCACTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCGTCGACTCGGTGGCGGCGCTC
ACGCCCAAGGCGGAGATCGAAGGCGAGATGGGCGACTCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCAGCCCCGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGATATCCGGCGCACCGGC
ACCATCAAGAAGGGCGAGGAGGCCATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTCTCGCCCCCGTTCAA
GACGGCGGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCCATGGCGAGATCATCGACATGGGCGTCACCGCCCGCA
TCCTCGAGAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGCGAGTTCCTG
CGCGAGAACCCGGAGCTGGCCCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATCCCGCTGCTGCCGGCCGACGC
CGAGGCGGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (18-280)

3D structure

• AlphaFold DB: F5Y292

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	80.864	92.571	0.749
recA	Pseudomonas stutzeri DSM 10701	72.699	93.143	0.677
recA	Neisseria gonorrhoeae MS11	71.341	93.714	0.669
recA	Neisseria gonorrhoeae MS11	71.341	93.714	0.669
recA	Neisseria gonorrhoeae strain FA1090	71.341	93.714	0.669
recA	Vibrio cholerae strain A1552	70.213	94	0.66
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70.213	94	0.66
recA	Glaesserella parasuis strain SC1401	70.988	92.571	0.657
recA	Acinetobacter baylyi ADP1	70.552	93.143	0.657
recA	Acinetobacter baumannii D1279779	70.552	93.143	0.657
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.085	94	0.64
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	66.869	94	0.629
recA	Helicobacter pylori strain NCTC11637	64.955	94.571	0.614
recA	Helicobacter pylori 26695	64.955	94.571	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.832	93.429	0.606
recA	Streptococcus pyogenes NZ131	61.012	96	0.586
recA	Latilactobacillus sakei subsp. sakei 23K	62.121	94.286	0.586
recA	Streptococcus mutans UA159	60.237	96.286	0.58
recA	Streptococcus pneumoniae D39	60.423	94.571	0.571
recA	Streptococcus pneumoniae Rx1	60.423	94.571	0.571
recA	Streptococcus pneumoniae R6	60.423	94.571	0.571
recA	Streptococcus pneumoniae TIGR4	60.423	94.571	0.571
recA	Lactococcus lactis subsp. cremoris KW2	60.606	94.286	0.571
recA	Streptococcus mitis NCTC 12261	60.121	94.571	0.569
recA	Streptococcus mitis SK321	60.121	94.571	0.569
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60	92.857	0.557