Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GTO84_RS03030 Genome accession   NZ_CP047412
Coordinates   657034..658179 (+) Length   381 a.a.
NCBI ID   WP_118272570.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 652034..663179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO84_RS03010 (GTO84_03020) yfmH 653158..654465 (+) 1308 WP_081539041.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GTO84_RS03015 (GTO84_03025) ymfI 654465..655190 (+) 726 WP_049153930.1 elongation factor P 5-aminopentanone reductase -
  GTO84_RS03020 (GTO84_03030) - 655272..656201 (+) 930 WP_003704681.1 helix-turn-helix domain-containing protein -
  GTO84_RS03025 (GTO84_03035) pgsA 656254..656841 (+) 588 WP_003700569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GTO84_RS03030 (GTO84_03040) recA 657034..658179 (+) 1146 WP_118272570.1 recombinase RecA Machinery gene
  GTO84_RS03035 (GTO84_03045) rny 658354..659919 (+) 1566 WP_003700566.1 ribonuclease Y -
  GTO84_RS03040 (GTO84_03050) mutS 660086..662716 (+) 2631 WP_118272571.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40963.16 Da        Isoelectric Point: 4.6476

>NTDB_id=413370 GTO84_RS03030 WP_118272570.1 657034..658179(+) (recA) [Ligilactobacillus salivarius strain 2D]
MANDKNKVQGDQPEERLKALDAALKKIEKKFGKGSIMKMGGKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIYGPESS
GKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALV
PKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKTKTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEA
IKAKSEIIGNRTKIKFVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENAKEYLS
EHEDEMNEINIKVREAYGIPDEDGNVPESQDENATQSAVDGKTTDIDDSEEVSLDVNDSDE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=413370 GTO84_RS03030 WP_118272570.1 657034..658179(+) (recA) [Ligilactobacillus salivarius strain 2D]
GTGGCTAATGACAAAAATAAAGTTCAAGGCGATCAACCTGAAGAAAGATTAAAGGCTTTAGATGCAGCTTTAAAAAAGAT
TGAGAAAAAGTTCGGTAAAGGTTCCATTATGAAAATGGGAGGAAAAGTAGATACAAAGATTTCTACTATTTCTAGTGGTT
CAATTGCTATTGATGCAGGATTAGGTGTAGGTGGTTATCCACGAGGACGTATTATTGAAATTTATGGTCCAGAAAGTTCT
GGTAAGACGACAGTTGCATTACATGCAGTTGCTGAAGTTCAAAAACGTGGTGGTACAGCAGCGTATATCGATGCTGAAAA
TGCTTTGGATCCTGCATATGCTACTGCACTGGGAGTGAACATTGATGAATTACTACTTTCACAACCAGACACTGGTGAAC
AAGGTTTAGAAATTGCTGATGCTTTGGTTTCATCTGGTGCAATTGATATAATTGTTGTTGACTCAGTAGCCGCTTTAGTA
CCTAAAGCTGAAATTGAGGGTGAAATGGGTGATTCTCATGTTGGGTTGCAAGCTCGTTTGATGTCACAGGCTTTAAGAAA
ACTTTCAGGTACAATCAATAAGACGAAGACTGTAGCTATATTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTG
GAAATCCTGAAACAACTCCTGGTGGTCGTGCTTTGAAGTTCTATTCAACTGTTAGAATGGAAGTGCGTCGTTCCGAAGCA
ATTAAGGCAAAATCTGAAATTATTGGTAATAGAACTAAGATTAAATTTGTGAAAAATAAGGTTGCTCCACCATTTAAAGT
GGCTGAAGTTGATATCATGTATGGTGAAGGTATTTCTAAAACTGGTGAATTACTGGATATGGCTGTTGAGAAGGATATCA
TTCACAAGAGTGGTTCTTGGTTCTCTTATGGAGATACAAGAATAGGCCAAGGACGTGAAAATGCTAAGGAATATCTTAGT
GAACACGAAGATGAGATGAATGAAATTAATATCAAAGTCAGAGAAGCATATGGTATACCAGATGAAGACGGAAATGTACC
TGAATCTCAAGACGAGAATGCTACTCAATCTGCTGTGGATGGCAAGACTACAGATATAGATGATTCTGAAGAAGTATCTT
TAGATGTAAATGATAGTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.341

90.026

0.732
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.139

0.651
  recA Streptococcus pneumoniae D39

65.499

97.375

0.638
  recA Streptococcus pneumoniae R6

65.499

97.375

0.638
  recA Streptococcus pneumoniae TIGR4

65.499

97.375

0.638
  recA Streptococcus pneumoniae Rx1

65.499

97.375

0.638
  recA Streptococcus mitis NCTC 12261

65.229

97.375

0.635
  recA Streptococcus mitis SK321

65.229

97.375

0.635
  recA Streptococcus mutans UA159

63.784

97.113

0.619
  recA Lactococcus lactis subsp. cremoris KW2

70.783

87.139

0.617
  recA Streptococcus pyogenes NZ131

70.213

86.352

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

86.089

0.551
  recA Glaesserella parasuis strain SC1401

56.63

95.013

0.538
  recA Neisseria gonorrhoeae strain FA1090

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Ralstonia pseudosolanacearum GMI1000

63.578

82.152

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.529

89.239

0.522
  recA Helicobacter pylori strain NCTC11637

58.631

88.189

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.756

86.089

0.514
  recA Vibrio cholerae strain A1552

59.756

86.089

0.514
  recA Helicobacter pylori 26695

58.333

88.189

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

85.039

0.512
  recA Acinetobacter baumannii D1279779

60.248

84.514

0.509
  recA Acinetobacter baylyi ADP1

60.377

83.465

0.504
  recA Pseudomonas stutzeri DSM 10701

58.879

84.252

0.496

Multiple sequence alignment