Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GS400_RS09550 Genome accession   NZ_CP047393
Coordinates   1849278..1850315 (+) Length   345 a.a.
NCBI ID   WP_160101197.1    Uniprot ID   A0A6P1HGZ1
Organism   Pontibacillus sp. HMF3514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844278..1855315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS400_RS09525 (GS400_09525) - 1844920..1845177 (+) 258 WP_027447508.1 DUF3243 domain-containing protein -
  GS400_RS09530 (GS400_09530) - 1845416..1846207 (+) 792 WP_160101189.1 YmfK family protein -
  GS400_RS09535 (GS400_09535) - 1846226..1847176 (+) 951 WP_160101191.1 RodZ family helix-turn-helix domain-containing protein -
  GS400_RS09540 (GS400_09540) pgsA 1847266..1847844 (+) 579 WP_160101193.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GS400_RS09545 (GS400_09545) - 1847844..1849103 (+) 1260 WP_160101195.1 competence/damage-inducible protein A -
  GS400_RS09550 (GS400_09550) recA 1849278..1850315 (+) 1038 WP_160101197.1 recombinase RecA Machinery gene
  GS400_RS09555 (GS400_09555) - 1850353..1850502 (+) 150 WP_160101199.1 hypothetical protein -
  GS400_RS09560 (GS400_09560) rny 1851095..1852657 (+) 1563 WP_160101201.1 ribonuclease Y -
  GS400_RS09565 (GS400_09565) - 1852886..1853683 (+) 798 WP_160101203.1 TIGR00282 family metallophosphoesterase -
  GS400_RS09570 (GS400_09570) spoVS 1853793..1854053 (+) 261 WP_044157499.1 stage V sporulation protein SpoVS -
  GS400_RS09575 (GS400_09575) - 1854225..1855163 (+) 939 WP_160101205.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37613.57 Da        Isoelectric Point: 5.0013

>NTDB_id=413210 GS400_RS09550 WP_160101197.1 1849278..1850315(+) (recA) [Pontibacillus sp. HMF3514]
MSDRKQALDMALRQIEKQFGKGSVMKLGEQAEKKINTVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQRQGGQAAFIDAEHALDPVYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAIDMIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLGGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KLKVVKNKVAPPFKQAEVDIMYGEGISAEGELLDIGTNLDIITKSGSWYSYNDERLGQGRENAKQFFKENPETYHEIHAK
IRQHYGMDETPDEEESEENQSSLDV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=413210 GS400_RS09550 WP_160101197.1 1849278..1850315(+) (recA) [Pontibacillus sp. HMF3514]
GTGAGTGATCGTAAACAAGCGCTCGACATGGCGTTACGTCAAATAGAAAAGCAATTCGGTAAAGGCTCTGTAATGAAGTT
AGGGGAGCAAGCCGAGAAGAAAATAAATACTGTACCAAGTGGTTCCTTGGCATTAGATGTTGCTTTAGGTGTTGGTGGTT
ATCCACGTGGTCGTATCGTTGAGATCTACGGACCTGAATCTTCTGGTAAAACAACTGTTGCTTTACATGCAATTGCAGAA
GCACAACGTCAAGGTGGACAAGCAGCATTTATTGATGCCGAGCATGCTCTAGACCCCGTTTATGCACGTGCATTAGGCGT
AGATATTGAAGAATTACTTCTATCCCAGCCTGATACAGGAGAACAAGCTCTAGAGATTGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGATATGATCGTAATCGACTCTGTTGCAGCGCTTGTTCCAAAAGCGGAGATCGAAGGTGAAATGGGAGATTCC
CACGTAGGTCTTCAAGCTCGTCTAATGTCTCAAGCTTTACGTAAGCTTGGTGGTGCCATTAACAAATCGAAGACAACAGC
TATTTTCATTAACCAAATCCGTGAAAAAGTCGGTGTCATGTTTGGTAACCCAGAAACAACTCCTGGTGGACGTGCGCTGA
AATTCTACTCTTCAGTTCGCCTTGAAGTACGTCGTGCGGAAACATTAAAACAGGGGAATGAAATGGTTGGTAATAAAACG
AAGCTCAAAGTCGTGAAAAATAAGGTAGCACCTCCATTTAAACAAGCTGAAGTAGATATCATGTACGGTGAAGGTATTTC
AGCTGAAGGTGAGCTTCTTGATATCGGTACAAACTTAGATATTATTACGAAGAGTGGTTCCTGGTACTCGTATAATGACG
AGCGCTTAGGCCAAGGTCGTGAAAATGCTAAGCAATTCTTCAAAGAGAATCCAGAAACGTATCACGAAATCCATGCAAAA
ATCCGTCAGCATTACGGAATGGATGAAACTCCAGATGAAGAAGAATCTGAAGAAAACCAAAGTAGTTTAGACGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1HGZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.537

95.072

0.794
  recA Latilactobacillus sakei subsp. sakei 23K

71.988

96.232

0.693
  recA Streptococcus mutans UA159

68.314

99.71

0.681
  recA Streptococcus mitis NCTC 12261

66.667

100

0.667
  recA Streptococcus mitis SK321

67.055

99.42

0.667
  recA Streptococcus pneumoniae Rx1

69.091

95.652

0.661
  recA Streptococcus pneumoniae D39

69.091

95.652

0.661
  recA Streptococcus pneumoniae R6

69.091

95.652

0.661
  recA Streptococcus pneumoniae TIGR4

69.091

95.652

0.661
  recA Streptococcus pyogenes NZ131

68.293

95.072

0.649
  recA Lactococcus lactis subsp. cremoris KW2

67.879

95.652

0.649
  recA Neisseria gonorrhoeae MS11

67.89

94.783

0.643
  recA Neisseria gonorrhoeae strain FA1090

67.89

94.783

0.643
  recA Neisseria gonorrhoeae MS11

67.89

94.783

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

94.783

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.939

95.072

0.617
  recA Acinetobacter baylyi ADP1

61.404

99.13

0.609
  recA Helicobacter pylori 26695

61.905

97.391

0.603
  recA Helicobacter pylori strain NCTC11637

61.905

97.391

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.357

98.261

0.603
  recA Acinetobacter baumannii D1279779

60.997

98.841

0.603
  recA Glaesserella parasuis strain SC1401

64.375

92.754

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

93.043

0.594
  recA Vibrio cholerae strain A1552

63.863

93.043

0.594
  recA Pseudomonas stutzeri DSM 10701

62.813

92.754

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.754

0.58

Multiple sequence alignment