Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PJ20_RS20980 Genome accession   NZ_CP047386
Coordinates   4774021..4775085 (-) Length   354 a.a.
NCBI ID   WP_039370955.1    Uniprot ID   A0A5E4UR05
Organism   Pandoraea fibrosis strain 7641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4769021..4780085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ20_RS20955 (PJ20_020955) - 4769381..4770109 (-) 729 WP_039370938.1 TerC family protein -
  PJ20_RS20960 (PJ20_020960) sucD 4770256..4771137 (-) 882 WP_039370940.1 succinate--CoA ligase subunit alpha -
  PJ20_RS20965 (PJ20_020965) sucC 4771222..4772388 (-) 1167 WP_039370944.1 ADP-forming succinate--CoA ligase subunit beta -
  PJ20_RS20970 (PJ20_020970) - 4772385..4773071 (-) 687 WP_039370948.1 DUF2889 domain-containing protein -
  PJ20_RS20975 (PJ20_020975) recX 4773381..4773836 (-) 456 WP_039370950.1 recombination regulator RecX -
  PJ20_RS20980 (PJ20_020980) recA 4774021..4775085 (-) 1065 WP_039370955.1 recombinase RecA Machinery gene
  PJ20_RS20985 (PJ20_020985) - 4775288..4775977 (+) 690 WP_039370958.1 response regulator transcription factor -
  PJ20_RS20990 (PJ20_020990) - 4776112..4777671 (+) 1560 WP_039371132.1 sensor histidine kinase -
  PJ20_RS20995 (PJ20_020995) - 4777843..4779501 (+) 1659 WP_039370962.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37813.13 Da        Isoelectric Point: 4.7721

>NTDB_id=413165 PJ20_RS20980 WP_039370955.1 4774021..4775085(-) (recA) [Pandoraea fibrosis strain 7641]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDSEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPEIAHDIENKVRASLGVTAINETGEIEEEDEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=413165 PJ20_RS20980 WP_039370955.1 4774021..4775085(-) (recA) [Pandoraea fibrosis strain 7641]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTCGCCGCCGCCCTCGCGCAGATCGA
GAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACAGCGAGGTCGAAGCAGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGTCTGGACATCGCGCTGGGCGTTGGTGGCCTGCCGCGCGGTCGCGTGATCGAAATTTACGGTCCGGAATCGTCG
GGCAAGACCACGCTCACGCTGCAAGTCGTGGCCGAGATGCAGAAGATCGGCGGCACCTGCGCGTTCATCGACGCAGAGCA
TGCGCTCGACGTCGGATACGCCAACAAGCTGGGCGTCTCGGTGCCTGAGCTGCTGATCTCGCAGCCGGACACGGGCGAAC
AGGCGCTGGAAATCGCCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTG
CCGAAGGCCGAAATCGAAGGCGAGATGGGTGATTCGCTGCCGGGTCTGCAAGCGCGTCTGATGTCTCAGGCCCTGCGTAA
GCTGACCGGCACCATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGTGTGATGTTCG
GTAACCCGGAAACCACGACGGGCGGTAACGCGCTGAAGTTCTACTCGTCGGTGCGTCTGGACATTCGCCGTATCGGCTCG
ATCAAGAAGGGCGACGAGGTTGTCGGTAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCCATCTTCGACATCCTTTACGGCCAGGGAATCTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGAACGCCAAGATCG
TCGAGAAGGCCGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGTAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGAGATTGCCCACGACATCGAAAACAAGGTGCGTGCATCGCTCGGCGTGACGGCGATCAACGAAACCGGCGA
GATCGAAGAAGAAGACGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4UR05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.593

100

0.856
  recA Neisseria gonorrhoeae strain FA1090

73.099

96.61

0.706
  recA Neisseria gonorrhoeae MS11

73.099

96.61

0.706
  recA Neisseria gonorrhoeae MS11

73.099

96.61

0.706
  recA Pseudomonas stutzeri DSM 10701

71.512

97.175

0.695
  recA Acinetobacter baumannii D1279779

71.137

96.893

0.689
  recA Acinetobacter baylyi ADP1

71.386

95.763

0.684
  recA Glaesserella parasuis strain SC1401

69.186

97.175

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.684

91.243

0.672
  recA Vibrio cholerae strain A1552

73.684

91.243

0.672
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.791

97.175

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.373

0.602
  recA Helicobacter pylori 26695

64.134

92.938

0.596
  recA Helicobacter pylori strain NCTC11637

63.83

92.938

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.938

0.593
  recA Streptococcus pneumoniae TIGR4

60

98.87

0.593
  recA Streptococcus pneumoniae Rx1

60

98.87

0.593
  recA Streptococcus pneumoniae D39

60

98.87

0.593
  recA Streptococcus pneumoniae R6

60

98.87

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.471

96.045

0.59
  recA Streptococcus mutans UA159

60.756

97.175

0.59
  recA Streptococcus mitis NCTC 12261

59.544

99.153

0.59
  recA Streptococcus mitis SK321

59.259

99.153

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

96.045

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.121

93.503

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.938

0.562

Multiple sequence alignment