Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GTN31_RS05370 Genome accession   NZ_CP047361
Coordinates   1064382..1065443 (+) Length   353 a.a.
NCBI ID   WP_086042409.1    Uniprot ID   -
Organism   Macrococcoides canis strain SD607     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059382..1070443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTN31_RS05345 (GTN31_05335) yfmH 1059897..1061165 (+) 1269 WP_164942061.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GTN31_RS05350 (GTN31_05340) - 1061158..1061865 (+) 708 WP_164942062.1 SDR family NAD(P)-dependent oxidoreductase -
  GTN31_RS05355 (GTN31_05345) - 1061876..1062667 (+) 792 WP_164942063.1 YmfK family protein -
  GTN31_RS05360 (GTN31_05350) - 1062683..1063504 (+) 822 WP_164942064.1 helix-turn-helix domain-containing protein -
  GTN31_RS05365 (GTN31_05355) pgsA 1063521..1064102 (+) 582 WP_133419324.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GTN31_RS05370 (GTN31_05360) recA 1064382..1065443 (+) 1062 WP_086042409.1 recombinase RecA Machinery gene
  GTN31_RS05375 (GTN31_05365) rny 1065729..1067288 (+) 1560 WP_086042410.1 ribonuclease Y -
  GTN31_RS05380 (GTN31_05370) - 1067438..1068232 (+) 795 WP_164942065.1 TIGR00282 family metallophosphoesterase -
  GTN31_RS05385 (GTN31_05375) - 1068337..1070070 (+) 1734 WP_164942066.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38441.57 Da        Isoelectric Point: 5.0167

>NTDB_id=412956 GTN31_RS05370 WP_086042409.1 1064382..1065443(+) (recA) [Macrococcoides canis strain SD607]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEVRDEIDQK
IRKAMGVGASLEEPSVQKEEVPVEDNLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=412956 GTN31_RS05370 WP_086042409.1 1064382..1065443(+) (recA) [Macrococcoides canis strain SD607]
ATGAGCGAAAGACAAAAAGCATTAGACACAGTTATTAAGAATATGGAGAAATCATTTGGGAAAGGTGCAGTTATGAAGCT
TGGAGATCGTACAGATCGCAATGTTTCAACTGTGTCAAGTGGTTCTATTACATTAGATAGTGCACTTGGCGTTGGCGGTT
ACCCGAAAGGTCGTATTATAGAAATTTATGGTCCGGAAAGTTCAGGTAAGACAACTGTTGCGCTTCATGCCATTGCAGAA
GTACAACGTCAAGGTGGTGTTGCTGCGTTTATTGATGCTGAGCATGCACTAGATCCAGTATACGCGAAGAATCTAGGAGT
AGATATCGAAAACCTATACTTATCTCAACCAGATCACGGTGAACAAGGACTTGAAATTGCAGAAGCGTTCGTTAGAAGTG
GTGCAGTGGATATAATTGTTGTCGATTCAGTTGCTGCGTTAACACCTAAAGCAGAGATTGAAGGTGAGATGGGAGACTCG
CATATGGGACTTCAGGCACGCCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTGTATCTAAGTCTAATACGATTGC
GATCTTTATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAGACAACTCCAGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTCCGTCTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTCAGGATATTGTAGGGAACAGAACA
AAGATTAAGGTCGTTAAAAATAAAGTAGCACCACCATTTAAGGTAGCTGAAGTAGATATTATGTACGGTAAAGGTATTTC
TCGTGAAGGAGAAATCGTGGATCTAGGCGCAGAATATGAAGTGCTACAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATCGGTCAAGGACGAGAAAATATTAAGACTTATCTGAAAGAGAATCCAGAAGTACGTGATGAAATCGACCAGAAG
ATACGTAAGGCGATGGGCGTTGGTGCTTCATTAGAAGAACCGTCAGTTCAAAAGGAAGAAGTGCCAGTAGAAGATAATTT
ATTCGACGACGAGCTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.758

92.635

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.839

100

0.688
  recA Streptococcus mitis SK321

62.259

100

0.64
  recA Streptococcus pyogenes NZ131

68.293

92.918

0.635
  recA Streptococcus mutans UA159

67.477

93.201

0.629
  recA Streptococcus pneumoniae D39

65.758

93.484

0.615
  recA Streptococcus mitis NCTC 12261

65.758

93.484

0.615
  recA Streptococcus pneumoniae Rx1

65.758

93.484

0.615
  recA Streptococcus pneumoniae R6

65.758

93.484

0.615
  recA Streptococcus pneumoniae TIGR4

65.758

93.484

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.848

93.484

0.606
  recA Acinetobacter baumannii D1279779

62.832

96.034

0.603
  recA Acinetobacter baylyi ADP1

64.832

92.635

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.068

0.592
  recA Neisseria gonorrhoeae strain FA1090

62.952

94.051

0.592
  recA Neisseria gonorrhoeae MS11

62.952

94.051

0.592
  recA Neisseria gonorrhoeae MS11

62.952

94.051

0.592
  recA Vibrio cholerae strain A1552

64.286

91.218

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.286

91.218

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.495

88.669

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

93.484

0.581
  recA Pseudomonas stutzeri DSM 10701

58.739

98.867

0.581
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.635

0.567
  recA Glaesserella parasuis strain SC1401

61.61

91.501

0.564

Multiple sequence alignment