Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GR140_RS21655 Genome accession   NZ_CP047311
Coordinates   4730093..4731139 (-) Length   348 a.a.
NCBI ID   WP_034048552.1    Uniprot ID   A0A0B1YWX6
Organism   Pseudomonas putida strain YC-AE1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4713328..4729813 4730093..4731139 flank 280


Gene organization within MGE regions


Location: 4713328..4731139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR140_RS21570 (GR140_21500) - 4713328..4715190 (+) 1863 WP_137108966.1 hypothetical protein -
  GR140_RS21575 (GR140_21505) - 4715192..4715731 (+) 540 WP_052742384.1 hypothetical protein -
  GR140_RS21580 (GR140_21510) - 4715728..4717011 (+) 1284 WP_079989982.1 site-specific integrase -
  GR140_RS21585 (GR140_21515) - 4717359..4717820 (-) 462 WP_070094660.1 helix-turn-helix domain-containing protein -
  GR140_RS21590 (GR140_21520) - 4717966..4718364 (+) 399 WP_070094661.1 hypothetical protein -
  GR140_RS21595 (GR140_21525) - 4718407..4718877 (+) 471 WP_070094662.1 hypothetical protein -
  GR140_RS21600 (GR140_21530) - 4718880..4719266 (+) 387 WP_070094663.1 hypothetical protein -
  GR140_RS21605 (GR140_21535) - 4719411..4720438 (-) 1028 Protein_4258 IS30-like element ISPsp7 family transposase -
  GR140_RS21610 (GR140_21540) - 4720541..4721017 (+) 477 WP_249183551.1 hypothetical protein -
  GR140_RS21615 (GR140_21545) - 4721193..4721597 (+) 405 WP_137187538.1 hypothetical protein -
  GR140_RS21620 (GR140_21550) - 4721711..4722583 (+) 873 WP_100412981.1 restriction endonuclease -
  GR140_RS21625 (GR140_21555) - 4722668..4723033 (+) 366 WP_070094665.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  GR140_RS21630 (GR140_21560) - 4723812..4724150 (-) 339 WP_137108964.1 hypothetical protein -
  GR140_RS21635 (GR140_21565) - 4724279..4726045 (-) 1767 WP_173585795.1 GGDEF domain-containing phosphodiesterase -
  GR140_RS21640 (GR140_21570) - 4726017..4727579 (-) 1563 WP_100412979.1 PAS domain-containing methyl-accepting chemotaxis protein -
  GR140_RS21650 (GR140_21580) - 4728202..4729320 (+) 1119 WP_170976261.1 hypothetical protein -
  GR140_RS21655 (GR140_21585) recA 4730093..4731139 (-) 1047 WP_034048552.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37376.89 Da        Isoelectric Point: 5.1447

>NTDB_id=412574 GR140_RS21655 WP_034048552.1 4730093..4731139(-) (recA) [Pseudomonas putida strain YC-AE1]
MDQAKNKALEMALSQIEKQFGKGAIMRLGSDRTMDIDVVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLTLSVIA
EAQRQGLTCAFVDAEHALDPIYAAKLGVNIDDLLCSQPDTGEQALEIVDILTRSGAVNVIVVDSVAALVPKAEIEGEIGD
SHVGLAARMMSQAMRKITGNLKNSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVSNNFVEKSGAWYSFEGNKIGQGKANTMKWLLENKPTMDKLEG
MIRDKLMSKPQTETSANLAALEEPADDY

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=412574 GR140_RS21655 WP_034048552.1 4730093..4731139(-) (recA) [Pseudomonas putida strain YC-AE1]
ATGGATCAGGCAAAAAACAAAGCGTTGGAAATGGCTCTTTCTCAGATCGAGAAGCAGTTTGGTAAGGGTGCCATCATGCG
GCTCGGCTCCGACCGCACAATGGATATCGATGTTGTCTCGACCGGTTCTCTGGGCCTTGACATCGCTCTGGGCGTGGGCG
GTCTGCCGCGTGGTCGTATTGTTGAAATCTACGGCCCAGAGTCTTCCGGTAAAACTACCCTGACTCTTTCCGTCATTGCT
GAAGCTCAGCGTCAAGGTTTGACCTGTGCATTCGTCGATGCTGAGCACGCCCTTGATCCAATCTATGCCGCCAAACTTGG
TGTGAATATCGATGATCTTCTGTGCTCGCAGCCTGACACTGGCGAACAGGCACTTGAGATCGTAGACATTCTGACTCGTT
CGGGTGCGGTCAACGTTATTGTCGTCGACTCCGTAGCTGCTCTTGTTCCGAAAGCTGAAATTGAAGGTGAGATCGGGGAC
TCCCATGTTGGCCTTGCCGCCCGAATGATGTCGCAGGCGATGAGGAAGATTACTGGTAACCTGAAGAACTCCAACACTAT
GTGTATCTTCATTAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTACGTCTGGACATCCGCCGTACCGGTGCGGTCAAGGAAGGCGACGAGGTGGTTGGTAGCGAA
ACCCGCGTTAAAGTGGTCAAGAACAAAGTTGCTGCTCCATTCAGGCAAGCCGAGTTCCAGATCGTTTACGGCCAAGGTAT
CAGCAAAGCCGGCGAGATCGTTGACCTGGCAGTTTCCAATAACTTCGTTGAAAAGTCTGGCGCCTGGTACTCCTTCGAAG
GCAACAAGATTGGTCAAGGTAAGGCCAATACCATGAAGTGGCTGCTGGAAAACAAGCCTACCATGGACAAGCTGGAAGGT
ATGATTCGCGACAAGTTGATGTCTAAGCCTCAGACTGAAACCTCTGCCAATCTCGCAGCTCTGGAAGAGCCAGCTGACGA
CTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YWX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.882

97.701

0.741
  recA Vibrio cholerae strain A1552

72.046

99.713

0.718
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.046

99.713

0.718
  recA Acinetobacter baylyi ADP1

70.058

98.851

0.693
  recA Acinetobacter baumannii D1279779

68.605

98.851

0.678
  recA Glaesserella parasuis strain SC1401

70.606

94.828

0.67
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Ralstonia pseudosolanacearum GMI1000

69.524

90.517

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

91.954

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

95.69

0.583
  recA Helicobacter pylori strain NCTC11637

60.542

95.402

0.578
  recA Helicobacter pylori 26695

60.241

95.402

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.856

93.966

0.572
  recA Streptococcus pyogenes NZ131

57.061

99.713

0.569
  recA Streptococcus pneumoniae D39

60.123

93.678

0.563
  recA Streptococcus pneumoniae Rx1

60.123

93.678

0.563
  recA Streptococcus pneumoniae R6

60.123

93.678

0.563
  recA Streptococcus pneumoniae TIGR4

60.123

93.678

0.563
  recA Streptococcus mitis NCTC 12261

60.062

92.816

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

93.391

0.555
  recA Streptococcus mitis SK321

59.752

92.816

0.555
  recA Streptococcus mutans UA159

59.752

92.816

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

59.561

91.667

0.546
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537

Multiple sequence alignment