Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | GJV84_RS05595 | Genome accession | NZ_CP047307 |
| Coordinates | 1155611..1156675 (+) | Length | 354 a.a. |
| NCBI ID | WP_003037330.1 | Uniprot ID | - |
| Organism | Citrobacter freundii strain L75 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1148495..1200986 | 1155611..1156675 | within | 0 |
Gene organization within MGE regions
Location: 1148495..1200986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV84_RS05550 (GJV84_05550) | gutQ | 1148495..1149460 (-) | 966 | WP_003037353.1 | arabinose-5-phosphate isomerase GutQ | - |
| GJV84_RS05555 (GJV84_05555) | - | 1149453..1150226 (-) | 774 | WP_003037350.1 | DNA-binding transcriptional repressor | - |
| GJV84_RS05560 (GJV84_05560) | gutM | 1150364..1150723 (-) | 360 | WP_003037348.1 | transcriptional regulator GutM | - |
| GJV84_RS05565 (GJV84_05565) | srlD | 1150779..1151558 (-) | 780 | WP_003037345.1 | sorbitol-6-phosphate dehydrogenase | - |
| GJV84_RS05570 (GJV84_05570) | srlB | 1151576..1151938 (-) | 363 | WP_044699689.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| GJV84_RS05575 (GJV84_05575) | - | 1151952..1152923 (-) | 972 | WP_071685064.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| GJV84_RS05580 (GJV84_05580) | srlA | 1152920..1153483 (-) | 564 | WP_003037339.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| GJV84_RS05585 (GJV84_05585) | mltB | 1153749..1154828 (+) | 1080 | WP_071685063.1 | lytic murein transglycosylase B | - |
| GJV84_RS05590 (GJV84_05590) | pncC | 1155021..1155518 (+) | 498 | WP_003037333.1 | nicotinamide-nucleotide amidase | - |
| GJV84_RS05595 (GJV84_05595) | recA | 1155611..1156675 (+) | 1065 | WP_003037330.1 | recombinase RecA | Machinery gene |
| GJV84_RS05600 (GJV84_05600) | recX | 1156748..1157248 (+) | 501 | WP_003037326.1 | recombination regulator RecX | - |
| GJV84_RS05605 (GJV84_05605) | alaS | 1157377..1160004 (+) | 2628 | WP_003037323.1 | alanine--tRNA ligase | - |
| GJV84_RS05610 (GJV84_05610) | csrA | 1160242..1160427 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| GJV84_RS05640 (GJV84_05640) | yqaB | 1161720..1162286 (+) | 567 | WP_044699675.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| GJV84_RS05645 (GJV84_05645) | - | 1162283..1162711 (+) | 429 | WP_003037317.1 | YqaA family protein | - |
| GJV84_RS05650 (GJV84_05650) | gshA | 1162789..1164345 (+) | 1557 | WP_003037314.1 | glutamate--cysteine ligase | - |
| GJV84_RS05655 (GJV84_05655) | luxS | 1164495..1165010 (+) | 516 | WP_003037312.1 | S-ribosylhomocysteine lyase | - |
| GJV84_RS05660 (GJV84_05660) | - | 1165357..1166724 (+) | 1368 | WP_071685062.1 | carbohydrate porin | - |
| GJV84_RS05665 (GJV84_05665) | emrB | 1166773..1168311 (-) | 1539 | WP_003037306.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| GJV84_RS05670 (GJV84_05670) | emrA | 1168328..1169500 (-) | 1173 | WP_016150872.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| GJV84_RS05675 (GJV84_05675) | emrR | 1169631..1170161 (-) | 531 | WP_003037300.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| GJV84_RS05680 (GJV84_05680) | ygaH | 1170252..1170587 (-) | 336 | WP_003037297.1 | L-valine transporter subunit YgaH | - |
| GJV84_RS05685 (GJV84_05685) | - | 1170577..1171314 (-) | 738 | WP_003839672.1 | AzlC family ABC transporter permease | - |
| GJV84_RS05690 (GJV84_05690) | - | 1171437..1172621 (-) | 1185 | WP_044713351.1 | MFS transporter | - |
| GJV84_RS05695 (GJV84_05695) | proX | 1172813..1173808 (-) | 996 | WP_071685061.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| GJV84_RS05700 (GJV84_05700) | proW | 1173876..1174940 (-) | 1065 | WP_071685060.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| GJV84_RS05705 (GJV84_05705) | proV | 1174933..1176135 (-) | 1203 | WP_003037282.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| GJV84_RS05710 (GJV84_05710) | nrdF | 1176490..1177449 (-) | 960 | WP_054528722.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| GJV84_RS05715 (GJV84_05715) | nrdE | 1177460..1179604 (-) | 2145 | WP_071685059.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| GJV84_RS05720 (GJV84_05720) | nrdI | 1179577..1179987 (-) | 411 | WP_003037273.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| GJV84_RS05725 (GJV84_05725) | nrdH | 1179984..1180229 (-) | 246 | WP_071685058.1 | glutaredoxin-like protein NrdH | - |
| GJV84_RS05730 (GJV84_05730) | - | 1180509..1180940 (-) | 432 | WP_003037267.1 | carboxymuconolactone decarboxylase family protein | - |
| GJV84_RS05735 (GJV84_05735) | - | 1181031..1182365 (+) | 1335 | WP_159359339.1 | PLP-dependent aminotransferase family protein | - |
| GJV84_RS05740 (GJV84_05740) | - | 1182614..1182964 (+) | 351 | WP_044699663.1 | DUF2002 family protein | - |
| GJV84_RS05745 (GJV84_05745) | alaE | 1183001..1183450 (-) | 450 | WP_003037259.1 | L-alanine exporter AlaE | - |
| GJV84_RS05750 (GJV84_05750) | stpA | 1184008..1184409 (+) | 402 | WP_003839690.1 | DNA-binding protein StpA | - |
| GJV84_RS05755 (GJV84_05755) | - | 1184446..1184625 (-) | 180 | WP_003037253.1 | hypothetical protein | - |
| GJV84_RS05760 (GJV84_05760) | - | 1184716..1185243 (-) | 528 | WP_071685056.1 | rhodanese family protein | - |
| GJV84_RS05765 (GJV84_05765) | - | 1185253..1185552 (-) | 300 | WP_003037247.1 | helix-turn-helix transcriptional regulator | - |
| GJV84_RS05770 (GJV84_05770) | - | 1185737..1185895 (+) | 159 | WP_003037242.1 | YqaE/Pmp3 family membrane protein | - |
| GJV84_RS05775 (GJV84_05775) | lysM | 1185991..1186440 (+) | 450 | WP_003037241.1 | peptidoglycan-binding protein LysM | - |
| GJV84_RS05780 (GJV84_05780) | csiR | 1186453..1187139 (-) | 687 | WP_003037236.1 | DNA-binding transcriptional regulator CsiR | - |
| GJV84_RS05785 (GJV84_05785) | gabP | 1187185..1188585 (-) | 1401 | WP_003839698.1 | GABA permease | - |
| GJV84_RS05790 (GJV84_05790) | gabT | 1188728..1190011 (-) | 1284 | WP_046670394.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| GJV84_RS05795 (GJV84_05795) | gabD | 1190037..1191485 (-) | 1449 | WP_016150865.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| GJV84_RS05800 (GJV84_05800) | lhgO | 1191509..1192777 (-) | 1269 | WP_071685055.1 | L-2-hydroxyglutarate oxidase | - |
| GJV84_RS05805 (GJV84_05805) | glaH | 1192797..1193774 (-) | 978 | WP_003839704.1 | glutarate dioxygenase GlaH | - |
| GJV84_RS05810 (GJV84_05810) | - | 1194014..1194727 (-) | 714 | WP_003037218.1 | MgtC/SapB family protein | - |
| GJV84_RS05815 (GJV84_05815) | - | 1194759..1195994 (-) | 1236 | WP_003037215.1 | MFS transporter | - |
| GJV84_RS05820 (GJV84_05820) | - | 1196006..1196830 (-) | 825 | WP_003037212.1 | MBL fold metallo-hydrolase | - |
| GJV84_RS05825 (GJV84_05825) | - | 1197165..1199339 (+) | 2175 | WP_071685054.1 | extracellular solute-binding protein | - |
| GJV84_RS05830 (GJV84_05830) | - | 1199392..1199997 (-) | 606 | WP_071685053.1 | short chain dehydrogenase | - |
| GJV84_RS05835 (GJV84_05835) | - | 1200096..1200986 (+) | 891 | WP_003839711.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38175.50 Da Isoelectric Point: 4.7535
>NTDB_id=412544 GJV84_RS05595 WP_003037330.1 1155611..1156675(+) (recA) [Citrobacter freundii strain L75]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVKETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVKETNEDF
Nucleotide
Download Length: 1065 bp
>NTDB_id=412544 GJV84_RS05595 WP_003037330.1 1155611..1156675(+) (recA) [Citrobacter freundii strain L75]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCCTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCATTTATCGATGCAGAACACGCACTGGACCCGGTCTATGCCCGTAA
GCTTGGCGTTGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCACTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCGTCTGTTCGTTTGGATATCCGTCGTATTGGTGCGGTGAAAGAAGGTGACAACGTGGTTGGC
AGCGAAACCCGCGTTAAGGTTGTGAAAAATAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCTGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACTGCGAAAGAAATT
GAGAAGAAATTACGTGAGCTACTGCTCAATAACCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGCGGCGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCCTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCATTTATCGATGCAGAACACGCACTGGACCCGGTCTATGCCCGTAA
GCTTGGCGTTGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCACTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCGTCTGTTCGTTTGGATATCCGTCGTATTGGTGCGGTGAAAGAAGGTGACAACGTGGTTGGC
AGCGAAACCCGCGTTAAGGTTGTGAAAAATAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCTGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACTGCGAAAGAAATT
GAGAAGAAATTACGTGAGCTACTGCTCAATAACCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGCGGCGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.