Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GSF13_RS21645 Genome accession   NZ_CP047240
Coordinates   3729540..3730595 (-) Length   351 a.a.
NCBI ID   WP_095729681.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3724540..3735595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF13_RS21630 (GSF13_21675) - 3724784..3726655 (+) 1872 WP_174170617.1 sodium:proton antiporter -
  GSF13_RS21635 (GSF13_21680) - 3727003..3727641 (-) 639 WP_010378945.1 SEL1-like repeat protein -
  GSF13_RS21640 (GSF13_21685) - 3727884..3729200 (-) 1317 WP_211867052.1 adenylosuccinate synthase -
  GSF13_RS21645 (GSF13_21690) recA 3729540..3730595 (-) 1056 WP_095729681.1 recombinase RecA Machinery gene
  GSF13_RS21650 (GSF13_21695) - 3730662..3731153 (-) 492 WP_102057545.1 nicotinamide-nucleotide amidohydrolase family protein -
  GSF13_RS21655 (GSF13_21700) mutS 3731178..3733769 (+) 2592 WP_206473685.1 DNA mismatch repair protein MutS -
  GSF13_RS21660 (GSF13_21705) - 3733816..3735072 (-) 1257 WP_102057547.1 outer membrane protein transport protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37803.48 Da        Isoelectric Point: 4.8270

>NTDB_id=411778 GSF13_RS21645 WP_095729681.1 3729540..3730595(-) (recA) [Pseudoalteromonas sp. M8]
MNDNKQKALDAALSQIERQFGKGSIMKLGENKALDIEAISTGSLGLDIALGIGGLPTGRIVEIYGPESSGKTTLTLQAIA
EAQKMGKTCAFVDAEHALDPIYAEKLGVNVDELLVSQPDTGEQALEICDMLVRSGAVDLVVIDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTANIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFIIMYGEGTSKQGELIDLGVKHKLVDKAGAWFSYNGSKIGQGKANSIKFLKENVEIANEIEG
KLREMLLAQAVIMPEEGEDKGLAEVEDDLEL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=411778 GSF13_RS21645 WP_095729681.1 3729540..3730595(-) (recA) [Pseudoalteromonas sp. M8]
ATGAACGATAACAAGCAAAAGGCATTAGACGCAGCACTATCACAAATTGAGCGTCAGTTTGGTAAAGGCTCAATCATGAA
ACTGGGTGAGAACAAGGCGCTAGATATTGAAGCCATCTCAACGGGTTCATTAGGTCTGGATATTGCACTTGGTATCGGCG
GCTTACCAACTGGTCGTATTGTTGAAATCTATGGTCCAGAATCATCAGGTAAAACAACGCTAACATTACAAGCGATTGCA
GAAGCGCAAAAAATGGGAAAAACATGTGCGTTCGTTGATGCTGAACACGCACTCGATCCAATCTATGCCGAAAAGCTAGG
CGTTAATGTTGATGAGTTATTAGTATCACAGCCTGACACCGGTGAACAAGCGCTTGAAATTTGTGACATGCTAGTTCGTT
CTGGTGCGGTTGATTTGGTTGTTATTGACTCGGTAGCAGCACTTACCCCTAAAGCTGAAATCGAAGGCGATATGGGTGAC
TCACACGTTGGTTTGCAGGCTCGACTCATGTCACAAGCATTGCGTAAGCTTACAGCTAATATCAAACGCTCGAACACATT
ATGTATTTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGCAACCCTGAAACCACAACTGGTGGTAACGCAC
TTAAATTCTATGCATCTGTACGTCTTGATATTCGTCGTATCGGTTCAGTGAAAGAAGGTGATGAGGTTGTTGGTAACGAA
ACTCGTGTTAAGGTTGTGAAAAACAAAGTAGCACCACCATTTAAACAAGCTGAGTTCATCATCATGTACGGCGAAGGCAC
GTCGAAACAAGGTGAGTTGATAGACCTTGGTGTGAAGCACAAACTGGTTGATAAAGCGGGTGCTTGGTTTAGCTATAACG
GCAGTAAAATTGGCCAAGGTAAAGCAAACTCAATTAAGTTCTTAAAAGAAAATGTTGAGATTGCCAATGAAATTGAAGGC
AAGTTAAGAGAAATGCTCCTAGCGCAAGCGGTTATTATGCCTGAAGAGGGTGAAGATAAAGGCCTTGCTGAAGTTGAAGA
TGATTTAGAGCTATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

78.899

93.162

0.735
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.899

93.162

0.735
  recA Acinetobacter baumannii D1279779

71.714

99.715

0.715
  recA Pseudomonas stutzeri DSM 10701

76.758

93.162

0.715
  recA Acinetobacter baylyi ADP1

74.848

94.017

0.704
  recA Glaesserella parasuis strain SC1401

75.309

92.308

0.695
  recA Neisseria gonorrhoeae MS11

73.926

92.877

0.687
  recA Neisseria gonorrhoeae MS11

73.926

92.877

0.687
  recA Neisseria gonorrhoeae strain FA1090

73.926

92.877

0.687
  recA Ralstonia pseudosolanacearum GMI1000

73.089

93.162

0.681
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.082

97.436

0.644
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.269

95.157

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

91.453

0.618
  recA Helicobacter pylori 26695

64.179

95.442

0.613
  recA Helicobacter pylori strain NCTC11637

64.179

95.442

0.613
  recA Streptococcus pneumoniae TIGR4

63.777

92.023

0.587
  recA Streptococcus pneumoniae R6

63.777

92.023

0.587
  recA Streptococcus pneumoniae D39

63.777

92.023

0.587
  recA Streptococcus pneumoniae Rx1

63.777

92.023

0.587
  recA Streptococcus mitis NCTC 12261

63.467

92.023

0.584
  recA Streptococcus mitis SK321

63.158

92.023

0.581
  recA Streptococcus mutans UA159

62.385

93.162

0.581
  recA Streptococcus pyogenes NZ131

62.08

93.162

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.696

90.883

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

91.453

0.558
  recA Lactococcus lactis subsp. cremoris KW2

60.372

92.023

0.556

Multiple sequence alignment