Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GSF12_RS09805 Genome accession   NZ_CP047226
Coordinates   2154626..2155681 (+) Length   351 a.a.
NCBI ID   WP_159375316.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2149626..2160681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS09795 (GSF12_09795) - 2151562..2152398 (+) 837 WP_228274310.1 DegV family protein -
  GSF12_RS09800 (GSF12_09800) - 2152554..2154185 (+) 1632 Protein_1915 acyl-CoA synthetase -
  GSF12_RS09805 (GSF12_09805) recA 2154626..2155681 (+) 1056 WP_159375316.1 recombinase RecA Machinery gene
  GSF12_RS09810 (GSF12_09810) - 2155787..2156419 (+) 633 WP_159375317.1 regulatory protein RecX -
  GSF12_RS09815 (GSF12_09815) - 2156428..2157516 (-) 1089 WP_159375318.1 sulfate ABC transporter substrate-binding protein -
  GSF12_RS09820 (GSF12_09820) ffh 2157697..2159163 (-) 1467 WP_065253465.1 signal recognition particle protein -
  GSF12_RS09825 (GSF12_09825) - 2159329..2160126 (+) 798 WP_172460484.1 cytochrome C assembly family protein -
  GSF12_RS09830 (GSF12_09830) acpP 2160210..2160452 (-) 243 WP_007115622.1 acyl carrier protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37683.14 Da        Isoelectric Point: 5.0391

>NTDB_id=411612 GSF12_RS09805 WP_159375316.1 2154626..2155681(+) (recA) [Moraxella osloensis strain YV1]
MDDNKAKALTAALSQIEKQFGKNTIMRLGDESAKINVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQAI
AQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNGEQALEIADMLVRSGAVDMIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGENIVGS
ETRVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGKANAIRFLEENPQIAQEIE
AKVRAAKLGNVEPVPEEAHDVEPPEFVEGMQ

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=411612 GSF12_RS09805 WP_159375316.1 2154626..2155681(+) (recA) [Moraxella osloensis strain YV1]
ATGGACGACAATAAAGCCAAAGCTTTAACTGCCGCTTTATCACAAATTGAAAAACAATTTGGTAAAAATACCATCATGCG
CCTGGGTGATGAGTCAGCAAAAATCAACGTGGATGTAGTGTCCACAGGCTCATTGGGTTTGGATATTGCACTGGGCATTG
GCGGTTTGCCAAAGGGTCGTATCGTCGAAATTTATGGTCCTGAAAGTTCGGGTAAAACCACTTTAACCTTGCAAGCAATC
GCCCAATGTCAAAAGCAAGGCGGTACCTGTGCTTTTATCGATGCTGAGCATGCGCTAGACCCTATTTATGCCAAAAAATT
GGGCGTTGATGTCGATGCTTTACTTGTCACGCAGCCTGACAACGGTGAACAAGCGCTTGAAATCGCCGATATGCTAGTGC
GCTCAGGTGCGGTGGATATGATTGTAGTTGACTCGGTCGCCGCGCTTACCCCACGTGCAGAGATTGAAGGCGAGATGGGC
GACAGCCACATGGGTCTGCAAGCGCGCTTGATGAGCCAAGCGCTACGTAAAATCACCGGTAACGCCAAACGTTCTAACTG
TATGGTGGTATTCATTAACCAAATTCGTATGAAAATCGGTGTCATGTTTGGTTCGCCAGAAACCACGACGGGTGGTAACG
CCCTTAAATTCTATGCGTCGGTGCGCTTGGATATTCGTCGTATTGGTGCGGTTAAAGAGGGTGAAAACATCGTCGGTTCT
GAGACCCGCGTTAAGGTCATCAAAAATAAACTGGCACCACCGTTCCGCCAAGCAGAATTTGACATCATGTATGGGACAGG
TACCAATCATTTAGGTGAAGTGGTTGACTTGGGTGTCGATATTGATGCGGTCAAAAAATCGGGCGCTTGGTACAGCTACA
ATGACAGTAAAATTGGTCAAGGTAAAGCCAACGCCATTAGATTCTTGGAAGAAAACCCCCAAATCGCCCAAGAGATTGAA
GCCAAAGTGCGCGCTGCTAAGCTTGGTAATGTCGAACCTGTGCCAGAAGAAGCGCATGACGTTGAACCCCCTGAGTTTGT
CGAAGGTATGCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

78.571

99.715

0.783
  recA Acinetobacter baumannii D1279779

78.098

98.86

0.772
  recA Pseudomonas stutzeri DSM 10701

72.911

98.86

0.721
  recA Vibrio cholerae strain A1552

70.704

100

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.704

100

0.715
  recA Neisseria gonorrhoeae strain FA1090

71.385

92.593

0.661
  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661
  recA Neisseria gonorrhoeae MS11

71.385

92.593

0.661
  recA Glaesserella parasuis strain SC1401

71.429

91.738

0.655
  recA Ralstonia pseudosolanacearum GMI1000

73.139

88.034

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

92.593

0.615
  recA Helicobacter pylori strain NCTC11637

62.941

96.866

0.61
  recA Helicobacter pylori 26695

62.647

96.866

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

93.732

0.595
  recA Streptococcus pneumoniae Rx1

57.939

100

0.593
  recA Streptococcus pneumoniae TIGR4

57.939

100

0.593
  recA Streptococcus pneumoniae R6

57.939

100

0.593
  recA Streptococcus pneumoniae D39

57.939

100

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.963

92.308

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.195

93.447

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

60.299

95.442

0.576
  recA Streptococcus mitis NCTC 12261

61.111

92.308

0.564
  recA Streptococcus pyogenes NZ131

60.736

92.877

0.564
  recA Streptococcus mitis SK321

60.802

92.308

0.561
  recA Streptococcus mutans UA159

59.816

92.877

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.185

92.308

0.556

Multiple sequence alignment