Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GSU40_RS06250 Genome accession   NZ_CP047185
Coordinates   1346739..1347806 (+) Length   355 a.a.
NCBI ID   WP_104224475.1    Uniprot ID   -
Organism   Rathayibacter sp. VKM Ac-2805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341739..1352806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSU40_RS06230 (GSU40_06230) pgsA 1344477..1345079 (+) 603 WP_104309766.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GSU40_RS06235 (GSU40_06235) - 1345076..1345558 (+) 483 WP_104224473.1 CinA family protein -
  GSU40_RS06240 (GSU40_06240) - 1345804..1346112 (+) 309 WP_068207524.1 helix-turn-helix transcriptional regulator -
  GSU40_RS06245 (GSU40_06245) - 1346234..1346458 (+) 225 WP_104224474.1 DUF3046 domain-containing protein -
  GSU40_RS06250 (GSU40_06250) recA 1346739..1347806 (+) 1068 WP_104224475.1 recombinase RecA Machinery gene
  GSU40_RS06255 (GSU40_06255) - 1347849..1348628 (+) 780 WP_160034109.1 regulatory protein RecX -
  GSU40_RS06260 (GSU40_06260) miaB 1348675..1350243 (+) 1569 WP_104238631.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GSU40_RS06265 (GSU40_06265) miaA 1350230..1351201 (+) 972 WP_160034111.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  GSU40_RS06270 (GSU40_06270) dapF 1351212..1352093 (+) 882 WP_160034113.1 diaminopimelate epimerase -
  GSU40_RS06275 (GSU40_06275) - 1352102..1352713 (-) 612 WP_160034115.1 methyltransferase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38101.56 Da        Isoelectric Point: 5.5357

>NTDB_id=411326 GSU40_RS06250 WP_104224475.1 1346739..1347806(+) (recA) [Rathayibacter sp. VKM Ac-2805]
MPSSSDREKSLETALAQIDRQFGKGAVMRLGSDDRAPVEVIQTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKEKARQFLIDNPDVAAEI
EKRILVKLGVIVDPNAAVEAAPVAIETKQPVRKGA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=411326 GSU40_RS06250 WP_104224475.1 1346739..1347806(+) (recA) [Rathayibacter sp. VKM Ac-2805]
ATGCCCAGTTCCTCCGACCGCGAGAAGTCCCTCGAGACCGCACTCGCCCAGATCGACCGCCAGTTCGGCAAGGGCGCCGT
CATGCGCCTCGGCAGCGACGACCGCGCTCCCGTCGAGGTGATCCAGACCGGTTCGATCGCGCTCGACGTCGCGCTCGGGA
TCGGCGGGCTCCCGCGCGGCCGCATCGTCGAGATCTACGGCCCCGAGTCCTCCGGAAAGACCACCCTCACCCTGCACGCG
ATCGCGAACGCGCAGCGCAACGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCGCTCGACCCCGAGTACGCCAAGAA
GCTCGGCGTCGACATCGACTCCCTCCTCGTGTCGCAGCCCGACACCGGAGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCGGGCTCGATCGACCTCATCGTGATCGACTCCGTCGCGGCCCTCGTGCCGCGTGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCGCGCCTCATGTCCCAGGCGCTGCGCAAGCTGACCGGCGGACTGAACACCACGAA
CACCACGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTCTTCTTCGGAAGCCCCGAGACCACGGCGGGCGGCA
AGGCGCTCAAGTTCTACGCGTCGGTCCGCCTCGACATCCGCCGCATCGAGACGCTGAAGGACGGCACCGACGCGGTCGGC
AACCGCACGCGCGTCAAGGTCGTGAAGAACAAGATGGCCCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAGGGCAGCCTGATCGACTTCGGCGTCGAGCACGAGATCGTCCGCAAGTCGGGCGCCTGGTACACCT
ACGACGGCGACCAGCTCGGTCAGGGCAAGGAGAAGGCGCGCCAGTTCCTCATCGACAACCCCGATGTGGCCGCCGAGATC
GAGAAGCGCATTCTGGTCAAGCTCGGCGTGATCGTCGACCCGAACGCGGCCGTCGAGGCCGCGCCGGTCGCGATCGAGAC
CAAGCAGCCCGTGCGCAAGGGCGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.667

95.493

0.637
  recA Ralstonia pseudosolanacearum GMI1000

67.901

91.268

0.62
  recA Acinetobacter baumannii D1279779

65.868

94.085

0.62
  recA Neisseria gonorrhoeae MS11

66.768

92.394

0.617
  recA Neisseria gonorrhoeae MS11

66.768

92.394

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.768

92.394

0.617
  recA Acinetobacter baylyi ADP1

67.183

90.986

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.371

94.085

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.771

89.859

0.6
  recA Vibrio cholerae strain A1552

66.771

89.859

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.831

0.583
  recA Helicobacter pylori strain NCTC11637

62.424

92.958

0.58
  recA Helicobacter pylori 26695

62.424

92.958

0.58
  recA Streptococcus mutans UA159

58.239

99.155

0.577
  recA Streptococcus mitis SK321

60.831

94.93

0.577
  recA Glaesserella parasuis strain SC1401

61.078

94.085

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

61.89

92.394

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.237

94.93

0.572
  recA Streptococcus mitis NCTC 12261

60.725

93.239

0.566
  recA Streptococcus pyogenes NZ131

60.976

92.394

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

93.239

0.563
  recA Streptococcus pneumoniae D39

60.121

93.239

0.561
  recA Streptococcus pneumoniae Rx1

60.121

93.239

0.561
  recA Streptococcus pneumoniae R6

60.121

93.239

0.561
  recA Streptococcus pneumoniae TIGR4

60.121

93.239

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

91.831

0.532

Multiple sequence alignment