Detailed information NTG0411232

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GRF55_RS01520
• Genome accession: NZ_CP047159
• Coordinates: 355992..357011 (+)
• Length: 339 a.a.
• NCBI ID: WP_220368809.1
• Uniprot ID: -
• Organism: Prevotella sp. Rep29
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	346418..381722	355992..357011	within	0

Gene organization within MGE regions

Location: 346418..381722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRF55_RS01485 (GRF55_01485)	-	346585..347586 (+)	1002	WP_220368803.1	DNA cytosine methyltransferase	-
GRF55_RS01490 (GRF55_01490)	-	347626..348468 (-)	843	WP_220368804.1	bifunctional UDP-sugar hydrolase/5'-nucleotidase	-
GRF55_RS01495 (GRF55_01495)	-	348490..349257 (-)	768	WP_220368805.1	5'-nucleotidase C-terminal domain-containing protein	-
GRF55_RS01500 (GRF55_01500)	-	349262..351484 (-)	2223	WP_220368806.1	alpha-N-acetylglucosaminidase	-
GRF55_RS01505 (GRF55_01505)	-	352214..353752 (+)	1539	WP_220368807.1	glycine--tRNA ligase	-
GRF55_RS01510 (GRF55_01510)	-	353759..354424 (+)	666	WP_255563812.1	FKBP-type peptidyl-prolyl cis-trans isomerase	-
GRF55_RS01515 (GRF55_01515)	-	354475..355716 (+)	1242	WP_220368808.1	saccharopine dehydrogenase family protein	-
GRF55_RS01520 (GRF55_01520)	recA	355992..357011 (+)	1020	WP_220368809.1	recombinase RecA	Machinery gene
GRF55_RS01525 (GRF55_01525)	dnaK	358287..360194 (+)	1908	WP_220368810.1	molecular chaperone DnaK	-
GRF55_RS01530 (GRF55_01530)	-	360421..360984 (+)	564	WP_220368811.1	helix-turn-helix domain-containing protein	-
GRF55_RS01535 (GRF55_01535)	-	360981..362240 (+)	1260	WP_220368812.1	site-specific integrase	-
GRF55_RS01540 (GRF55_01540)	-	362586..362945 (+)	360	WP_091823871.1	helix-turn-helix domain-containing protein	-
GRF55_RS01545 (GRF55_01545)	-	362942..364312 (+)	1371	WP_220368813.1	DUF3987 domain-containing protein	-
GRF55_RS01550 (GRF55_01550)	-	364413..365444 (+)	1032	Protein_292	DUF6371 domain-containing protein	-
GRF55_RS01555 (GRF55_01555)	mobV	365976..368093 (+)	2118	WP_220368815.1	MobV family relaxase	-
GRF55_RS01560 (GRF55_01560)	-	368243..368539 (-)	297	WP_220368816.1	hypothetical protein	-
GRF55_RS01565 (GRF55_01565)	-	368519..369775 (+)	1257	WP_220368817.1	restriction endonuclease subunit S	-
GRF55_RS01570 (GRF55_01570)	-	369794..370597 (-)	804	WP_220368818.1	tyrosine-type recombinase/integrase	-
GRF55_RS01575 (GRF55_01575)	-	370663..371190 (+)	528	WP_255563813.1	restriction endonuclease subunit S	-
GRF55_RS01580 (GRF55_01580)	-	371185..372567 (-)	1383	WP_220368820.1	restriction endonuclease subunit S	-
GRF55_RS01585 (GRF55_01585)	-	372567..373988 (-)	1422	WP_220368821.1	class I SAM-dependent DNA methyltransferase	-
GRF55_RS01590 (GRF55_01590)	-	374018..374680 (-)	663	WP_220368822.1	hypothetical protein	-
GRF55_RS01595 (GRF55_01595)	-	374686..377391 (-)	2706	WP_220368823.1	DEAD/DEAH box helicase family protein	-
GRF55_RS01600 (GRF55_01600)	-	377472..377675 (-)	204	WP_220369583.1	helix-turn-helix transcriptional regulator	-
GRF55_RS01605 (GRF55_01605)	-	378309..378518 (+)	210	WP_091824851.1	helix-turn-helix transcriptional regulator	-
GRF55_RS01610 (GRF55_01610)	-	378535..380082 (+)	1548	WP_220368824.1	helix-turn-helix domain-containing protein	-
GRF55_RS01615 (GRF55_01615)	-	380084..380881 (+)	798	WP_220368825.1	hypothetical protein	-

Sequence

Protein

• Length: 339 a.a.
• Molecular weight: 36713.91 Da
• Isoelectric Point: 5.3157

>NTDB_id=411232 GRF55_RS01520 WP_220368809.1 355992..357011(+) (recA) [Prevotella sp. Rep29]
MTKDNNNPVNEGKLKALQAAMSKIEKDFGKGSIMRMGDEQIENVEVIPTGSIGLNAALGVGGYPRGRIIEIYGPESSGKT
TLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQPDNGEQALEIADQLIRSSAVDILVVDSVAALTPKK
EIEGDMGDSNVGLQARLMSQALRKLTSTISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTGIKD
GDQIIGNQVRVKVVKNKVAPPFRKAEFEITFGEGISKVGELVDLGVEYGIIQKSGSWFSYGESKLAQGRDATKALLHDNP
ELCEEIEQKIMQVISDKQQ

Nucleotide

• Length: 1020 bp

>NTDB_id=411232 GRF55_RS01520 WP_220368809.1 355992..357011(+) (recA) [Prevotella sp. Rep29]
ATGACAAAAGACAACAACAATCCCGTGAATGAGGGAAAACTGAAAGCCTTGCAGGCTGCCATGTCGAAGATAGAGAAAGA
CTTCGGTAAAGGCTCCATCATGCGCATGGGCGACGAGCAGATAGAAAACGTAGAGGTGATTCCTACCGGCAGTATCGGAC
TGAATGCTGCACTCGGCGTGGGGGGCTACCCGCGCGGAAGAATCATTGAGATTTACGGACCGGAAAGTTCTGGTAAGACG
ACGCTCGCCATTCATGCCATTGCCGAGGCACAGAAGGCTGGAGGCATCGCTGCCTTCATCGATGCCGAGCATGCGTTCGA
CCGGTTCTATGCAGCCAAGTTGGGCGTTGATATCGACAACCTGTGGATTTCGCAGCCTGACAACGGTGAGCAGGCGCTCG
AGATAGCCGATCAGCTCATCCGTTCAAGCGCAGTCGATATCCTGGTGGTTGACTCCGTGGCAGCCCTCACTCCGAAAAAG
GAAATCGAAGGCGATATGGGCGACAGCAATGTCGGTCTGCAAGCACGACTGATGAGCCAGGCACTCAGAAAACTGACCAG
CACCATCAGCAAGACCAATACGACATGTATCTTCATCAACCAGTTGCGTGAGAAAATCGGCGTGATGTTCGGAAATCCGG
AGACCACGACGGGTGGCAACGCGCTGAAGTTCTATGCCAGCGTCCGACTCGACATCCGCAAGGTGACTGGCATCAAAGAC
GGCGATCAGATTATCGGCAACCAGGTGCGCGTGAAGGTGGTGAAGAACAAGGTGGCACCGCCGTTCCGGAAAGCGGAGTT
CGAAATCACGTTCGGCGAAGGCATCTCGAAGGTTGGCGAACTGGTGGACCTCGGTGTGGAATACGGCATCATCCAGAAGT
CGGGCAGTTGGTTCTCCTACGGGGAAAGCAAACTGGCTCAGGGACGCGATGCCACGAAAGCGCTCCTGCACGACAATCCC
GAGCTTTGCGAAGAAATCGAACAGAAAATCATGCAGGTGATTTCTGATAAACAGCAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (15-276)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	67.93	100	0.687
recA	Neisseria gonorrhoeae strain FA1090	66.254	95.28	0.631
recA	Neisseria gonorrhoeae MS11	66.254	95.28	0.631
recA	Neisseria gonorrhoeae MS11	66.254	95.28	0.631
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.325	95.28	0.622
recA	Glaesserella parasuis strain SC1401	63.385	95.87	0.608
recA	Streptococcus pyogenes NZ131	63.975	94.985	0.608
recA	Acinetobacter baylyi ADP1	63.975	94.985	0.608
recA	Helicobacter pylori strain NCTC11637	62.048	97.935	0.608
recA	Helicobacter pylori 26695	62.048	97.935	0.608
recA	Acinetobacter baumannii D1279779	63.665	94.985	0.605
recA	Streptococcus mitis NCTC 12261	64.062	94.395	0.605
recA	Streptococcus mitis SK321	64.062	94.395	0.605
recA	Bacillus subtilis subsp. subtilis str. 168	64.762	92.92	0.602
recA	Ralstonia pseudosolanacearum GMI1000	66.019	91.15	0.602
recA	Streptococcus pneumoniae D39	63.438	94.395	0.599
recA	Streptococcus pneumoniae TIGR4	63.438	94.395	0.599
recA	Streptococcus pneumoniae Rx1	63.438	94.395	0.599
recA	Streptococcus pneumoniae R6	63.438	94.395	0.599
recA	Latilactobacillus sakei subsp. sakei 23K	64.444	92.92	0.599
recA	Pseudomonas stutzeri DSM 10701	62.733	94.985	0.596
recA	Streptococcus mutans UA159	62.813	94.395	0.593
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.403	98.82	0.587
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.429	96.165	0.581
recA	Vibrio cholerae strain A1552	60.429	96.165	0.581
recA	Lactococcus lactis subsp. cremoris KW2	61.25	94.395	0.578