Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DESRU_RS09875 Genome accession   NC_015589
Coordinates   1960623..1961669 (+) Length   348 a.a.
NCBI ID   WP_013841963.1    Uniprot ID   F6DUR2
Organism   Desulforamulus ruminis DSM 2154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955623..1966669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESRU_RS09860 (Desru_1940) - 1955835..1957316 (+) 1482 WP_013841960.1 AAA family ATPase -
  DESRU_RS09865 (Desru_1941) - 1957450..1958688 (+) 1239 WP_013841961.1 competence/damage-inducible protein A -
  DESRU_RS09870 (Desru_1942) - 1958719..1960317 (+) 1599 WP_013841962.1 DEAD/DEAH box helicase -
  DESRU_RS09875 (Desru_1943) recA 1960623..1961669 (+) 1047 WP_013841963.1 recombinase RecA Machinery gene
  DESRU_RS09880 (Desru_1944) rny 1961981..1963522 (+) 1542 WP_013841964.1 ribonuclease Y -
  DESRU_RS09885 (Desru_1945) - 1963795..1964313 (+) 519 WP_013841965.1 hypothetical protein -
  DESRU_RS09890 (Desru_1946) - 1964330..1965109 (+) 780 WP_013841966.1 TIGR00282 family metallophosphoesterase -
  DESRU_RS09895 (Desru_1947) - 1965233..1965493 (+) 261 WP_008413380.1 stage V sporulation protein S -
  DESRU_RS09900 (Desru_1948) - 1965589..1966530 (+) 942 WP_013841967.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37455.05 Da        Isoelectric Point: 6.3077

>NTDB_id=41018 DESRU_RS09875 WP_013841963.1 1960623..1961669(+) (recA) [Desulforamulus ruminis DSM 2154]
MSDKTKALELALSQIEKQFGKGSIMKLGDSTKLNIEAISTGALSLDIALGVGGLPRGRVVEIYGPESSGKTTIALHVIAE
AQRLGGMAAFIDAEHALDPVYARRLGVDIENLLVSQPDTGEQALEICEALVRSGAIDVVVVDSVAALVPRAEIEGEMGDT
HVGLQARLMSQALRKLTGIVSKSKTTVIFINQIREKVGVVYGSPEVTTGGRALKFYASVRLEVRKQENIKQGVDIVGSRT
KVKVVKNKVAPPFKLAEFDMMYGTGISREGSILDVATDLKIVNKSGAWYSYGDERLGQGRENVKEFFKERPDLCQEIEGK
VREKLSLGNTSLPGKDDLSLPAGDTEIS

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=41018 DESRU_RS09875 WP_013841963.1 1960623..1961669(+) (recA) [Desulforamulus ruminis DSM 2154]
ATGTCCGATAAAACAAAAGCCTTGGAACTTGCTTTATCACAAATAGAGAAACAGTTTGGCAAAGGGTCAATTATGAAGCT
GGGGGATTCCACCAAGTTAAACATTGAAGCAATTTCCACCGGCGCTTTGTCCCTGGACATTGCCTTGGGGGTTGGAGGCC
TTCCCCGGGGGCGGGTGGTAGAAATTTATGGACCTGAGTCTTCCGGTAAAACCACCATTGCTCTGCATGTTATTGCTGAA
GCGCAAAGACTGGGAGGCATGGCTGCTTTTATTGATGCGGAGCATGCCCTGGATCCTGTTTATGCCCGTCGTTTGGGAGT
GGACATTGAGAATTTGCTGGTATCCCAACCGGATACCGGTGAACAAGCGCTGGAAATCTGCGAAGCCCTGGTCCGCAGCG
GCGCCATTGACGTAGTAGTGGTGGATTCGGTGGCTGCTTTGGTTCCCCGGGCTGAAATAGAGGGCGAGATGGGGGATACC
CATGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCTCTGCGGAAATTAACCGGTATTGTCAGCAAGTCCAAGACCACGGT
TATTTTTATTAATCAAATCCGGGAAAAGGTTGGCGTTGTCTATGGTTCCCCGGAGGTTACCACCGGTGGACGTGCTTTAA
AGTTTTATGCCTCCGTGCGCCTGGAAGTCAGGAAGCAGGAAAACATTAAACAGGGCGTGGATATTGTCGGCAGCCGCACG
AAAGTTAAAGTTGTGAAAAACAAAGTGGCCCCGCCTTTTAAATTGGCCGAATTCGATATGATGTATGGCACCGGCATTTC
CCGGGAAGGCAGTATTTTGGATGTGGCCACCGACCTGAAAATTGTTAATAAAAGTGGGGCCTGGTATTCTTATGGCGATG
AAAGATTGGGTCAGGGCCGGGAGAATGTAAAAGAATTCTTTAAGGAACGACCGGATTTGTGTCAGGAAATCGAAGGCAAG
GTTCGCGAGAAATTGAGCCTGGGGAACACAAGTTTGCCGGGGAAAGATGATTTAAGCCTTCCCGCCGGAGATACGGAGAT
TTCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6DUR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.181

95.402

0.67
  recA Latilactobacillus sakei subsp. sakei 23K

63.372

98.851

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

94.54

0.615
  recA Helicobacter pylori strain NCTC11637

63.69

96.552

0.615
  recA Helicobacter pylori 26695

63.393

96.552

0.612
  recA Ralstonia pseudosolanacearum GMI1000

68.051

89.943

0.612
  recA Acinetobacter baumannii D1279779

65.944

92.816

0.612
  recA Acinetobacter baylyi ADP1

65.635

92.816

0.609
  recA Pseudomonas stutzeri DSM 10701

62.353

97.701

0.609
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.634

94.253

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.732

92.241

0.606
  recA Neisseria gonorrhoeae MS11

65.732

92.241

0.606
  recA Neisseria gonorrhoeae MS11

65.732

92.241

0.606
  recA Vibrio cholerae strain A1552

64.396

92.816

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.396

92.816

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

93.678

0.595
  recA Streptococcus pneumoniae TIGR4

62.424

94.828

0.592
  recA Streptococcus pneumoniae Rx1

62.424

94.828

0.592
  recA Streptococcus pneumoniae R6

62.424

94.828

0.592
  recA Streptococcus pneumoniae D39

62.424

94.828

0.592
  recA Glaesserella parasuis strain SC1401

63.467

92.816

0.589
  recA Streptococcus mitis SK321

61.818

94.828

0.586
  recA Streptococcus mitis NCTC 12261

61.818

94.828

0.586
  recA Streptococcus pyogenes NZ131

61.468

93.966

0.578
  recA Lactococcus lactis subsp. cremoris KW2

61.231

93.391

0.572
  recA Streptococcus mutans UA159

60.486

94.54

0.572

Multiple sequence alignment