Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQR89_RS15755 Genome accession   NZ_CP047024
Coordinates   3714114..3715154 (-) Length   346 a.a.
NCBI ID   WP_158770922.1    Uniprot ID   -
Organism   Paraglaciecola sp. L1A13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3709114..3720154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR89_RS15735 ccmB 3709191..3709859 (-) 669 WP_158770918.1 heme exporter protein CcmB -
  GQR89_RS15740 ccmA 3709856..3710485 (-) 630 WP_158770919.1 cytochrome c biogenesis heme-transporting ATPase CcmA -
  GQR89_RS15745 - 3710824..3713541 (+) 2718 WP_158770920.1 flagellar hook-length control protein FliK -
  GQR89_RS15750 - 3713578..3713916 (+) 339 WP_158770921.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  GQR89_RS15755 recA 3714114..3715154 (-) 1041 WP_158770922.1 recombinase RecA Machinery gene
  GQR89_RS15760 - 3715438..3715848 (-) 411 WP_158770923.1 GFA family protein -
  GQR89_RS15765 - 3715947..3716318 (-) 372 WP_158770924.1 DUF3224 domain-containing protein -
  GQR89_RS15770 pncC 3716404..3716883 (-) 480 WP_158770925.1 nicotinamide-nucleotide amidase -
  GQR89_RS15775 mutS 3717006..3719675 (+) 2670 WP_158770926.1 DNA mismatch repair protein MutS -
  GQR89_RS15780 - 3719748..3720110 (-) 363 WP_158770927.1 response regulator -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37571.10 Da        Isoelectric Point: 5.5475

>NTDB_id=409947 GQR89_RS15755 WP_158770922.1 3714114..3715154(-) (recA) [Paraglaciecola sp. L1A13]
MVTTTDKSKALASAMAQIEKQFGKGSIMKLGENRTMDVETISTGSLGLDIALGAGGFPMGRIVEIYGPESSGKTTLTLEV
VAEAQRNGKVCAFVDAEHALDPIYAAKLGVNIDELLVSQPDTGEQALEICDMLTRSGAVDIIVVDSVAALTPKAEIEGDM
GDSHMGLQARMLSQAMRKLTGNLKQSNTMMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRCDIRRIGAVKDGDEITG
NETRVKVVKNKIAPPFKQAEFQIMYGEGINRDGELIDLGVKHGFVQKAGAWYSYGEERIGQGKANSTKYLKEHKEVRDEL
NKRLRDLLLSPKDPAPKEAVVPEQEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=409947 GQR89_RS15755 WP_158770922.1 3714114..3715154(-) (recA) [Paraglaciecola sp. L1A13]
ATGGTTACTACGACAGACAAAAGCAAAGCATTAGCCTCAGCAATGGCCCAAATTGAAAAGCAATTTGGCAAAGGCTCAAT
TATGAAATTGGGTGAGAATAGAACAATGGATGTAGAAACTATTTCTACAGGCTCGCTGGGTTTAGATATTGCTTTGGGCG
CTGGCGGCTTCCCGATGGGACGAATTGTTGAGATTTACGGGCCTGAGTCAAGCGGTAAAACCACTTTGACGCTTGAGGTT
GTTGCTGAAGCTCAACGTAACGGTAAAGTATGTGCTTTCGTTGATGCGGAACATGCCCTTGACCCAATCTATGCCGCAAA
ATTGGGTGTTAATATCGATGAACTTTTGGTCTCTCAACCTGACACGGGTGAACAAGCACTAGAAATATGTGACATGTTAA
CGCGCTCTGGTGCTGTCGATATTATAGTGGTCGATTCAGTCGCCGCCTTAACGCCAAAAGCAGAGATTGAAGGTGATATG
GGAGACAGCCATATGGGTCTTCAAGCCCGAATGCTTTCGCAAGCAATGCGTAAGCTGACAGGTAATCTAAAACAGTCGAA
CACGATGATGATTTTCATCAACCAGATCCGCATGAAAATTGGTGTGATGTTTGGTTCTCCTGAGACGACTACTGGTGGTA
ATGCCCTTAAATTCTACGCGAGTGTTCGATGTGATATTCGCCGTATAGGGGCTGTAAAAGACGGTGATGAAATCACAGGT
AACGAAACCCGAGTAAAAGTGGTTAAGAACAAAATTGCACCGCCCTTTAAACAAGCTGAATTTCAGATTATGTACGGTGA
AGGAATTAACAGAGATGGCGAGTTAATTGACTTGGGCGTAAAACACGGATTTGTGCAGAAGGCTGGCGCTTGGTATAGCT
ATGGCGAAGAGCGTATCGGACAAGGTAAAGCAAATTCAACCAAATATCTCAAAGAGCATAAAGAAGTGCGAGACGAACTG
AATAAAAGACTCAGAGATTTACTGTTAAGCCCTAAAGATCCTGCACCGAAAGAAGCGGTGGTTCCAGAGCAAGAAGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.488

94.798

0.763
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.488

94.798

0.763
  recA Pseudomonas stutzeri DSM 10701

72.531

93.642

0.679
  recA Acinetobacter baylyi ADP1

71.385

93.931

0.671
  recA Glaesserella parasuis strain SC1401

71.605

93.642

0.671
  recA Acinetobacter baumannii D1279779

71.077

93.931

0.668
  recA Neisseria gonorrhoeae MS11

70.462

93.931

0.662
  recA Neisseria gonorrhoeae MS11

70.462

93.931

0.662
  recA Neisseria gonorrhoeae strain FA1090

70.462

93.931

0.662
  recA Ralstonia pseudosolanacearum GMI1000

69.132

89.884

0.621
  recA Helicobacter pylori strain NCTC11637

60.933

99.133

0.604
  recA Helicobacter pylori 26695

60.641

99.133

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

63.975

93.064

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.354

93.064

0.59
  recA Streptococcus pneumoniae Rx1

62.462

93.931

0.587
  recA Streptococcus pneumoniae D39

62.462

93.931

0.587
  recA Streptococcus pneumoniae R6

62.462

93.931

0.587
  recA Streptococcus pneumoniae TIGR4

62.462

93.931

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

95.087

0.581
  recA Streptococcus mitis NCTC 12261

61.231

93.931

0.575
  recA Streptococcus mitis SK321

61.231

93.931

0.575
  recA Streptococcus pyogenes NZ131

61.111

93.642

0.572
  recA Streptococcus mutans UA159

60.802

93.642

0.569
  recA Lactococcus lactis subsp. cremoris KW2

60.802

93.642

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.486

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

60.938

92.486

0.564

Multiple sequence alignment