Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQR42_RS19815 Genome accession   NZ_CP046973
Coordinates   3966087..3967154 (+) Length   355 a.a.
NCBI ID   WP_158201290.1    Uniprot ID   -
Organism   Microcystis aeruginosa FD4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3961087..3972154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR42_RS19795 (GQR42_19845) - 3961423..3961839 (+) 417 WP_002766354.1 XisH family protein -
  GQR42_RS19800 (GQR42_19850) - 3961827..3962162 (+) 336 WP_158201287.1 XisI protein -
  GQR42_RS19805 (GQR42_19855) - 3962965..3964263 (-) 1299 WP_158201288.1 pentapeptide repeat-containing protein -
  GQR42_RS27920 - 3964427..3964600 (+) 174 WP_199273215.1 hypothetical protein -
  GQR42_RS19810 (GQR42_19860) - 3965006..3965959 (+) 954 WP_158201289.1 aldo/keto reductase -
  GQR42_RS19815 (GQR42_19865) recA 3966087..3967154 (+) 1068 WP_158201290.1 recombinase RecA Machinery gene
  GQR42_RS19820 (GQR42_19870) - 3967184..3967780 (-) 597 WP_158201291.1 hypothetical protein -
  GQR42_RS19825 (GQR42_19875) - 3967825..3968694 (-) 870 WP_158201292.1 bile acid:sodium symporter family protein -
  GQR42_RS19830 (GQR42_19880) - 3968825..3969040 (-) 216 WP_233271089.1 hypothetical protein -
  GQR42_RS19835 (GQR42_19885) - 3969453..3970780 (+) 1328 Protein_3983 RNA-guided endonuclease InsQ/TnpB family protein -
  GQR42_RS19840 (GQR42_19890) - 3970791..3970976 (+) 186 WP_158201295.1 hypothetical protein -
  GQR42_RS19845 (GQR42_19895) - 3971129..3971383 (+) 255 Protein_3985 hypothetical protein -
  GQR42_RS19850 (GQR42_19900) - 3971370..3971723 (-) 354 WP_158202529.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38181.51 Da        Isoelectric Point: 4.6967

>NTDB_id=409775 GQR42_RS19815 WP_158201290.1 3966087..3967154(+) (recA) [Microcystis aeruginosa FD4]
MATTTSNPDRDKALGLVLNQIERNFGKGSIMRLGDATRMRVETVPSGALTLDMALGGGLPKGRIVEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENIAQGRDNAVKYLEEKPEVA
AEIEKLLRDKLDMGSVPFPTEPADEDDEDDQEPEI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=409775 GQR42_RS19815 WP_158201290.1 3966087..3967154(+) (recA) [Microcystis aeruginosa FD4]
ATGGCGACAACGACAAGTAATCCCGATCGAGATAAGGCCTTAGGTTTAGTCTTAAATCAAATCGAGCGCAACTTTGGCAA
AGGTTCGATTATGCGTTTAGGAGATGCCACCAGGATGCGGGTGGAAACCGTGCCTAGTGGTGCTTTAACCCTAGATATGG
CTTTGGGTGGCGGCCTACCGAAAGGCCGCATCGTCGAAATTTACGGGCCAGAAAGTTCTGGCAAAACCACTTTAGCCCTC
CATGCGATCGCAGAAGTGCAGAAAGCTGGGGGAGTGGCGGCCTTTGTCGATGCGGAACACGCTTTAGATCCCACCTATTC
GGAAGATTTAGGGGTAGATATCAATAATTTACTGGTGGCACAACCGGATACGGGGGAAGCAGCCTTAGAAATAGTTGACC
AGTTAGTGCGTTCTTCGGCCGTGGATATCGTTGTCATCGACTCGGTGGCCGCTTTAGTGCCGCGGGCGGAAATTGAAGGG
GAAATGGGGGATAATCAGGTGGGTTTGCAGGCCCGTTTGATGAGTAAAGCCCTGCGAAAAATTGCCGGTAATATTGGTAA
ATCGGGTTGTGTGGTGATTTTCCTCAACCAACTGCGGCAAAAAATCGGTGTCACCTACGGCAATCCTGAAGTGACCACTG
GGGGGACGGCCTTAAAATTTTATGCCTCGGTACGTTTAGATATCCGTCGCATTCAAACTTTGAAAAAAGGCACGGAAGGG
GAATACGGAATTCGGGCTAAAGTTAAGGTGGCTAAAAATAAAGTCGCGCCTCCTTTCCGGATTGCTGAATTTGATATTAT
CTTCGGTAAAGGCATTTCCCAGGTGGGTTGTATGCTCGATATCGCCGAACAAACGAACGTAGTTACTCGCAAAGGGGCAT
GGTATAGCTATAATGGCGAAAATATTGCCCAGGGTCGCGATAATGCCGTTAAATATCTTGAAGAAAAGCCAGAAGTAGCG
GCAGAAATTGAGAAGTTATTGCGGGATAAATTAGACATGGGTTCGGTTCCTTTCCCCACGGAACCGGCCGATGAGGACGA
TGAGGACGATCAGGAACCAGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.207

98.028

0.6
  recA Pseudomonas stutzeri DSM 10701

60.819

96.338

0.586
  recA Ralstonia pseudosolanacearum GMI1000

62.162

93.803

0.583
  recA Acinetobacter baumannii D1279779

60.174

96.901

0.583
  recA Glaesserella parasuis strain SC1401

57.349

97.746

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

58.358

96.056

0.561
  recA Neisseria gonorrhoeae strain FA1090

57.184

98.028

0.561
  recA Neisseria gonorrhoeae MS11

57.184

98.028

0.561
  recA Neisseria gonorrhoeae MS11

57.184

98.028

0.561
  recA Helicobacter pylori strain NCTC11637

57.681

97.183

0.561
  recA Helicobacter pylori 26695

57.681

97.183

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.18

90.704

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.507

94.366

0.552
  recA Streptococcus pneumoniae R6

58.485

92.958

0.544
  recA Streptococcus pneumoniae Rx1

58.485

92.958

0.544
  recA Streptococcus pneumoniae D39

58.485

92.958

0.544
  recA Streptococcus pneumoniae TIGR4

58.485

92.958

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

91.268

0.544
  recA Vibrio cholerae strain A1552

59.568

91.268

0.544
  recA Streptococcus mitis SK321

58.769

91.549

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.958

0.535
  recA Streptococcus mitis NCTC 12261

58.154

91.549

0.532
  recA Streptococcus pyogenes NZ131

56.287

94.085

0.53
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.881

92.113

0.524
  recA Streptococcus mutans UA159

57.231

91.549

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.321

91.268

0.496

Multiple sequence alignment