Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GNX18_RS02460 Genome accession   NZ_CP046948
Coordinates   557217..558251 (+) Length   344 a.a.
NCBI ID   WP_138236553.1    Uniprot ID   -
Organism   Microbulbifer sp. SH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 552217..563251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX18_RS02435 (GNX18_02425) recJ 552596..554326 (+) 1731 WP_138236548.1 single-stranded-DNA-specific exonuclease RecJ -
  GNX18_RS02440 (GNX18_02430) - 554399..555310 (+) 912 WP_138236549.1 DMT family transporter -
  GNX18_RS02445 (GNX18_02435) - 555337..555963 (+) 627 WP_166215228.1 LysE family translocator -
  GNX18_RS02450 (GNX18_02440) - 556030..556545 (+) 516 WP_166215230.1 hypothetical protein -
  GNX18_RS02455 (GNX18_02445) - 556574..557086 (+) 513 WP_138236552.1 CinA family protein -
  GNX18_RS02460 (GNX18_02450) recA 557217..558251 (+) 1035 WP_138236553.1 recombinase RecA Machinery gene
  GNX18_RS02465 (GNX18_02455) - 558260..558838 (+) 579 WP_240914338.1 regulatory protein RecX -
  GNX18_RS02470 (GNX18_02460) glpK 558985..560481 (+) 1497 WP_138236554.1 glycerol kinase GlpK -
  GNX18_RS02475 (GNX18_02465) - 560607..561467 (+) 861 WP_138236555.1 alpha/beta hydrolase -
  GNX18_RS02480 (GNX18_02470) - 561606..561794 (+) 189 WP_138236556.1 Trm112 family protein -
  GNX18_RS02485 (GNX18_02475) - 561832..562194 (+) 363 WP_138236557.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36784.03 Da        Isoelectric Point: 5.5470

>NTDB_id=409595 GNX18_RS02460 WP_138236553.1 557217..558251(+) (recA) [Microbulbifer sp. SH-1]
MDSNKDKALQAALSQIERQFGKGTVMRMGEKGRERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGEEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINLLGEIVDYGVKHGLVDKAGAWYSYKGDKIGQGKANAVKFLRENADIRNDIES
QLRALLLGDAGAGAAQPAVEAAED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=409595 GNX18_RS02460 WP_138236553.1 557217..558251(+) (recA) [Microbulbifer sp. SH-1]
ATGGATTCCAACAAAGACAAGGCATTACAGGCGGCGCTGTCTCAGATCGAGCGCCAGTTTGGCAAGGGCACCGTCATGCG
CATGGGGGAGAAAGGGCGCGAGCGTATTCCCGCCATTTCCACCGGCTCACTGGGGTTGGATGTGGCTCTCGGTATTGGCG
GTCTGCCCCGCGGCCGTATTGTCGAGATCTATGGCCCGGAGTCTTCCGGTAAAACAACCCTGACCCTGCAGGTGATTGCC
GAGGCCCAGCGCAAGGGCGGTACCTGTGCCTTCGTGGATGCGGAACACGCGCTCGACCCGATTTACGCGGAGAAGCTCGG
CGTCAATGTGGATGAGCTGATCGTCTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAGTGGCGGACATGCTGGTGCGTT
CCGGTGCGGTGGACGTGCTGGTTGTGGACTCCGTGGCGGCGCTGACCCCGCGTGCGGAAATCGAAGGTGAAATGGGTGAC
TCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCACTGCGCAAACTGACCGGCAATATCAAGAACACCAACACCCT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCTCTCCGGAGACCACCACCGGGGGGAATGCGC
TCAAGTTCTACTCTTCTGTGCGTCTGGATATCCGCCGCATCGGCTCGGTGAAAGATGGCGAGGAAGTGGTCGGTAATGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCGCCACCGTTCAAGCAGACCGAATTTCAGATCATGTATGGTGAGGGTAT
CAACCTGCTGGGTGAAATCGTCGACTATGGCGTGAAGCATGGTCTAGTGGACAAGGCTGGTGCTTGGTACAGCTACAAGG
GCGACAAGATCGGTCAAGGCAAGGCTAATGCGGTCAAGTTTCTGCGAGAAAACGCAGATATCCGCAACGACATCGAGTCC
CAGCTGCGTGCGTTGCTACTGGGTGATGCTGGTGCCGGCGCTGCCCAACCGGCAGTGGAAGCTGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.744

100

0.767
  recA Acinetobacter baumannii D1279779

72.321

97.674

0.706
  recA Vibrio cholerae strain A1552

73.7

95.058

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

95.058

0.701
  recA Acinetobacter baylyi ADP1

73.03

95.93

0.701
  recA Neisseria gonorrhoeae MS11

72.086

94.767

0.683
  recA Neisseria gonorrhoeae MS11

72.086

94.767

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.086

94.767

0.683
  recA Ralstonia pseudosolanacearum GMI1000

70.821

95.64

0.677
  recA Glaesserella parasuis strain SC1401

70.807

93.605

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.741

94.186

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

65.732

93.314

0.613
  recA Helicobacter pylori strain NCTC11637

63.58

94.186

0.599
  recA Helicobacter pylori 26695

63.58

94.186

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

96.221

0.596
  recA Streptococcus mutans UA159

61.92

93.895

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

63.091

92.151

0.581
  recA Streptococcus pneumoniae R6

60.429

94.767

0.573
  recA Streptococcus pneumoniae Rx1

60.429

94.767

0.573
  recA Streptococcus pneumoniae D39

60.429

94.767

0.573
  recA Streptococcus pneumoniae TIGR4

60.429

94.767

0.573
  recA Streptococcus mitis NCTC 12261

60.308

94.477

0.57
  recA Streptococcus mitis SK321

60

94.477

0.567
  recA Streptococcus pyogenes NZ131

59.502

93.314

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

93.895

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.927

95.349

0.552

Multiple sequence alignment