Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQA94_RS19105 Genome accession   NZ_CP046902
Coordinates   4121406..4122449 (-) Length   347 a.a.
NCBI ID   WP_158189490.1    Uniprot ID   A0A6I6LU57
Organism   Stutzerimonas stutzeri strain PM101005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4116406..4127449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS19085 (GQA94_19090) - 4116819..4119224 (-) 2406 WP_158189486.1 xylulose 5-phosphate 3-epimerase -
  GQA94_RS19090 (GQA94_19095) - 4119261..4119494 (-) 234 WP_158189487.1 hypothetical protein -
  GQA94_RS19095 (GQA94_19100) - 4119779..4120858 (+) 1080 WP_158189488.1 LOG family protein -
  GQA94_RS19100 (GQA94_19105) recX 4120933..4121400 (-) 468 WP_158189489.1 recombination regulator RecX -
  GQA94_RS19105 (GQA94_19110) recA 4121406..4122449 (-) 1044 WP_158189490.1 recombinase RecA Machinery gene
  GQA94_RS19110 (GQA94_19115) - 4122534..4123034 (-) 501 WP_158189491.1 CinA family protein -
  GQA94_RS19115 (GQA94_19120) - 4123181..4123606 (-) 426 WP_158190172.1 potassium channel family protein -
  GQA94_RS19120 (GQA94_19125) mutS 4123873..4126446 (+) 2574 WP_158189492.1 DNA mismatch repair protein MutS -
  GQA94_RS19125 (GQA94_19130) fdxA 4126578..4126901 (+) 324 WP_158189493.1 ferredoxin FdxA -
  GQA94_RS19130 (GQA94_19135) - 4126958..4127149 (-) 192 WP_158189494.1 CsbD family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37087.56 Da        Isoelectric Point: 5.8779

>NTDB_id=409239 GQA94_RS19105 WP_158189490.1 4121406..4122449(-) (recA) [Stutzerimonas stutzeri strain PM101005]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEENPEIGREIEQ
QIRDKLLVVAPNTKASPVAADLAEADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=409239 GQA94_RS19105 WP_158189490.1 4121406..4122449(-) (recA) [Stutzerimonas stutzeri strain PM101005]
ATGGACGAGAACAAGAAGCGTGCCTTGGCTGCTGCCTTGGGCCAGATCGAAAAACAGTTCGGTAAAGGCGCGGTCATGCG
CATGGGCGATCATGATCGTCAGGCGATTCCCTCCATTTCCACCGGCTCGCTGGGCCTGGACATCGCGCTGGGTATTGGCG
GTCTGCCCAAGGGCCGGATCGTTGAAATCTATGGTCCGGAATCTTCCGGCAAGACCACGCTGACGCTCTCGGTCATCGCA
GAAGCCCAGAAAATGGGGGCGACTTGCGCCTTCGTCGATGCCGAACATGCACTCGATCCCGATTACGCGGGCAAGCTAGG
CGTCAATGTCGACGATCTGTTGGTTTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATTACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCGGTGGCCGCATTGGTTCCCAAGGCGGAAATCGAAGGTGAGATGGGCGAC
ACCCACGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCATTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGTCT
GGTGATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACGACTACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTCGACATTCGCCGTACCGGTGCAGTGAAGGAAGGCGACGAAGTGGTGGGTAGCGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTAGCGCCGCCGTTCCGCCAGGCTGAGTTCCAGATTCTGTACGGCAAGGGTAT
CTACCGCAACGGCGAGGTCATCGATCTGGGTGTGCAGCAAGGCCTGGTCGAGAAGTCTGGCGCCTGGTATGCCTACAAGG
GCAACAAGATCGGGCAGGGCAAGGCCAACGCCGCCAAGTATCTGGAAGAGAATCCGGAGATCGGCCGCGAGATCGAGCAG
CAGATTCGCGACAAGCTGCTGGTTGTTGCGCCGAATACAAAGGCCAGCCCGGTTGCCGCGGATCTGGCCGAAGCCGATCT
TTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LU57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

95.677

100

0.957
  recA Acinetobacter baylyi ADP1

75.893

96.83

0.735
  recA Acinetobacter baumannii D1279779

75.904

95.677

0.726
  recA Vibrio cholerae strain A1552

75.229

94.236

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.229

94.236

0.709
  recA Glaesserella parasuis strain SC1401

72.271

97.695

0.706
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae strain FA1090

71.914

93.372

0.671
  recA Ralstonia pseudosolanacearum GMI1000

74.598

89.625

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

94.236

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori 26695

62.691

94.236

0.591
  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus pneumoniae Rx1

59.816

93.948

0.562
  recA Streptococcus pneumoniae D39

59.816

93.948

0.562
  recA Streptococcus pneumoniae R6

59.816

93.948

0.562
  recA Streptococcus pneumoniae TIGR4

59.816

93.948

0.562
  recA Streptococcus mitis SK321

56.358

99.712

0.562
  recA Streptococcus mutans UA159

59.385

93.66

0.556
  recA Streptococcus mitis NCTC 12261

59.752

93.084

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.507

0.55
  recA Streptococcus pyogenes NZ131

58.232

94.524

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.895

93.084

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment