Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGTDC60_RS03530 Genome accession   NC_015571
Coordinates   842960..843982 (+) Length   340 a.a.
NCBI ID   WP_004584116.1    Uniprot ID   A0A0E2LLY6
Organism   Porphyromonas gingivalis TDC60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837960..848982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGTDC60_RS03505 (PGTDC60_0803) mnmE 838033..839457 (-) 1425 WP_013815672.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  PGTDC60_RS03510 (PGTDC60_0804) - 839621..840532 (-) 912 WP_013815673.1 hypothetical protein -
  PGTDC60_RS03515 - 840822..841724 (+) 903 WP_012457950.1 IS982-like element IS195 family transposase -
  PGTDC60_RS09895 (PGTDC60_0807) - 841781..842311 (-) 531 WP_102947771.1 hypothetical protein -
  PGTDC60_RS03525 (PGTDC60_0808) bcp 842484..842939 (+) 456 WP_012457992.1 thioredoxin-dependent thiol peroxidase -
  PGTDC60_RS03530 (PGTDC60_0809) recA 842960..843982 (+) 1023 WP_004584116.1 recombinase RecA Machinery gene
  PGTDC60_RS03535 (PGTDC60_0810) - 844056..845021 (+) 966 WP_043890029.1 GNAT family N-acetyltransferase -
  PGTDC60_RS03540 (PGTDC60_0811) - 845018..846379 (+) 1362 WP_013815678.1 polysaccharide deacetylase family protein -
  PGTDC60_RS03545 (PGTDC60_0812) - 846376..847626 (+) 1251 WP_013815679.1 glycosyltransferase -
  PGTDC60_RS03550 (PGTDC60_0813) - 847642..848742 (+) 1101 WP_004584120.1 chorismate mutase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36888.28 Da        Isoelectric Point: 5.5493

>NTDB_id=40910 PGTDC60_RS03530 WP_004584116.1 842960..843982(+) (recA) [Porphyromonas gingivalis TDC60]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=40910 PGTDC60_RS03530 WP_004584116.1 842960..843982(+) (recA) [Porphyromonas gingivalis TDC60]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAGGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTCGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGTAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCTCGTTCCGGCGAGATCATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAACTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.605

100

0.694
  recA Bacillus subtilis subsp. subtilis str. 168

66.246

93.235

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.417

95.882

0.618
  recA Helicobacter pylori 26695

63.497

95.882

0.609
  recA Helicobacter pylori strain NCTC11637

63.497

95.882

0.609
  recA Ralstonia pseudosolanacearum GMI1000

66.238

91.471

0.606
  recA Glaesserella parasuis strain SC1401

60.909

97.059

0.591
  recA Neisseria gonorrhoeae strain FA1090

64.194

91.176

0.585
  recA Neisseria gonorrhoeae MS11

64.194

91.176

0.585
  recA Neisseria gonorrhoeae MS11

64.194

91.176

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

95.588

0.585
  recA Streptococcus pyogenes NZ131

58.982

98.235

0.579
  recA Pseudomonas stutzeri DSM 10701

61.18

94.706

0.579
  recA Acinetobacter baumannii D1279779

60.615

95.588

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.372

95

0.574
  recA Acinetobacter baylyi ADP1

59.091

97.059

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.633

96.176

0.574
  recA Vibrio cholerae strain A1552

59.633

96.176

0.574
  recA Streptococcus mitis NCTC 12261

60.125

94.412

0.568
  recA Streptococcus mitis SK321

60.125

94.412

0.568
  recA Streptococcus mutans UA159

57.784

98.235

0.568
  recA Streptococcus pneumoniae Rx1

59.502

94.412

0.562
  recA Streptococcus pneumoniae D39

59.502

94.412

0.562
  recA Streptococcus pneumoniae R6

59.502

94.412

0.562
  recA Streptococcus pneumoniae TIGR4

59.502

94.412

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

97.353

0.559

Multiple sequence alignment