Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SERAS9_RS03895 Genome accession   NC_015567
Coordinates   863109..864173 (+) Length   354 a.a.
NCBI ID   WP_004950320.1    Uniprot ID   S4YC90
Organism   Serratia plymuthica AS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 858109..869173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERAS9_RS03875 (SerAS9_0761) chbR 859047..859910 (+) 864 WP_013811543.1 transcriptional regulator ChbR -
  SERAS9_RS03880 (SerAS9_0762) chbG 860063..860824 (+) 762 WP_013811544.1 chitin disaccharide deacetylase -
  SERAS9_RS03885 (SerAS9_0763) - 860859..862253 (-) 1395 WP_013811545.1 MFS transporter -
  SERAS9_RS03890 (SerAS9_0764) pncC 862508..862996 (+) 489 WP_013811546.1 nicotinamide-nucleotide amidase -
  SERAS9_RS03895 (SerAS9_0765) recA 863109..864173 (+) 1065 WP_004950320.1 recombinase RecA Machinery gene
  SERAS9_RS03900 (SerAS9_0766) recX 864238..864744 (+) 507 WP_004950322.1 recombination regulator RecX -
  SERAS9_RS03905 (SerAS9_0767) alaS 864877..867504 (+) 2628 WP_013811547.1 alanine--tRNA ligase -
  SERAS9_RS03910 (SerAS9_0768) csrA 867757..867942 (+) 186 WP_004950328.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37922.32 Da        Isoelectric Point: 4.8856

>NTDB_id=40890 SERAS9_RS03895 WP_004950320.1 863109..864173(+) (recA) [Serratia plymuthica AS9]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAAEL
DKKLRDLLLHSNGELVTATNESFDDGEAETSEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=40890 SERAS9_RS03895 WP_004950320.1 863109..864173(+) (recA) [Serratia plymuthica AS9]
ATGGCTATTGATGAGAACAAGCAAAAGGCGTTAGCTGCGGCACTGGGCCAGATTGAGAAACAGTTCGGCAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCTATGGATGTAGAAACGATCTCCACCGGCTCACTGTCACTCGATATCGCACTGGGTG
CGGGCGGCCTGCCAATGGGCCGTATCGTTGAAATTTATGGCCCGGAATCCTCCGGTAAAACCACTCTGACGCTGCAGGTT
ATCGCTGCCGCACAGCGCGAAGGCAAAACTTGCGCATTTATCGATGCCGAGCACGCGCTGGACCCGATTTATGCCAAAAA
ACTGGGCGTCGATATCGACAACCTGCTGTGTTCCCAGCCGGACACCGGTGAACAGGCTCTGGAAATTTGTGATGCCTTGA
CCCGTTCTGGTGCGGTTGACGTGATCATCGTTGACTCCGTAGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCACATATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACGCCAA
CACGCTGTTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTCATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCACTGAAATTCTATGCTTCTGTTCGTCTGGATATCCGCCGTATCGGTGCGGTTAAAGAAGGCGATGAAGTGGTGGGC
AGTGAAACCCGCGTTAAAGTGGTGAAAAACAAAATCGCTGCGCCATTCAAGCAGGCTGAGTTCCAAATTCTGTACGGTGA
AGGCATCAACAGCCGCGGTGAACTGGTCGATCTGGGCGTTAAGCACAAGATGATCGAGAAAGCCGGCGCCTGGTACAGTT
ATAACGGCGATAAAATCGGTCAGGGTAAGGCGAATGCCTGCAACTTCCTGAAAGAAAACCCGGCTGTTGCCGCTGAGTTG
GATAAAAAACTGCGCGACCTGCTGCTGCACAGCAACGGTGAACTGGTTACTGCTACCAATGAAAGCTTCGATGATGGCGA
AGCTGAAACCAGCGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S4YC90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.921

100

0.819
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.921

100

0.819
  recA Pseudomonas stutzeri DSM 10701

72.832

97.74

0.712
  recA Glaesserella parasuis strain SC1401

68.857

98.87

0.681
  recA Acinetobacter baylyi ADP1

70.882

96.045

0.681
  recA Acinetobacter baumannii D1279779

72.948

92.938

0.678
  recA Neisseria gonorrhoeae MS11

65.341

99.435

0.65
  recA Neisseria gonorrhoeae MS11

65.341

99.435

0.65
  recA Neisseria gonorrhoeae strain FA1090

65.341

99.435

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.096

87.853

0.616
  recA Helicobacter pylori strain NCTC11637

60.057

98.305

0.59
  recA Helicobacter pylori 26695

59.77

98.305

0.588
  recA Streptococcus mutans UA159

58.523

99.435

0.582
  recA Streptococcus pneumoniae Rx1

61.194

94.633

0.579
  recA Streptococcus pneumoniae TIGR4

61.194

94.633

0.579
  recA Streptococcus pneumoniae R6

61.194

94.633

0.579
  recA Streptococcus pneumoniae D39

61.194

94.633

0.579
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

61.92

91.243

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

60.79

92.938

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.538

91.808

0.565
  recA Streptococcus pyogenes NZ131

61.538

91.808

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.808

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.785

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

92.09

0.542

Multiple sequence alignment