Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DELCS14_RS27935 Genome accession   NC_015563
Coordinates   6354930..6356033 (+) Length   367 a.a.
NCBI ID   WP_012202806.1    Uniprot ID   A0A210VWF6
Organism   Delftia sp. Cs1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6349930..6361033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DELCS14_RS27915 (DelCs14_5648) - 6350944..6351954 (+) 1011 WP_013804575.1 LysR substrate-binding domain-containing protein -
  DELCS14_RS27920 (DelCs14_5649) - 6351911..6353413 (-) 1503 WP_013804576.1 sensor histidine kinase -
  DELCS14_RS27925 (DelCs14_5650) - 6353508..6354182 (-) 675 WP_012202808.1 response regulator transcription factor -
  DELCS14_RS27930 (DelCs14_5651) - 6354282..6354782 (-) 501 WP_013804577.1 MarR family transcriptional regulator -
  DELCS14_RS27935 (DelCs14_5652) recA 6354930..6356033 (+) 1104 WP_012202806.1 recombinase RecA Machinery gene
  DELCS14_RS27940 (DelCs14_5653) recX 6356237..6356713 (+) 477 WP_013804578.1 recombination regulator RecX -
  DELCS14_RS27945 (DelCs14_5654) yddG 6356710..6357630 (-) 921 WP_043796951.1 aromatic amino acid DMT transporter YddG -
  DELCS14_RS27950 (DelCs14_5655) - 6357653..6359533 (-) 1881 WP_013804580.1 hypothetical protein -
  DELCS14_RS27955 (DelCs14_5656) argC 6359530..6360462 (-) 933 WP_013804581.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38922.61 Da        Isoelectric Point: 5.3675

>NTDB_id=40836 DELCS14_RS27935 WP_012202806.1 6354930..6356033(+) (recA) [Delftia sp. Cs1-4]
MNTAVTTANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRA
EIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKK
GDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENS
GLAVEIENKVRDSLGIALLPTAGGDAPEAKAAKAGKAKADKDGVIEA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=40836 DELCS14_RS27935 WP_012202806.1 6354930..6356033(+) (recA) [Delftia sp. Cs1-4]
ATGAACACCGCCGTCACCACCGCCAACAGTGAAAAAGCCAAGGCCCTGCAGGCCGCACTCGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCACGATCATGCGCCTGGGTGAAGGCGAAGCCATCCAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTGGGCGTGGGCGGCCTGCCCCGTGGCCGCGTGATCGAGATCTACGGCCCTGAATCCTCGGGCAAGACC
ACGCTGACGCTGCAGGTCATCGCCGAAATGCAAAAGCAGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCACTGGA
CACCAGCTACGCCCAGAAGCTGGGCGTGAACCTCAACGAAGTGCTGATCAGCCAGCCCGATACCGGCGAGCAGGCCCTGG
AAATCGTGGACAGCCTGGTGCGCTCGGGTGCCGTGGACATGATCGTCGTGGACTCGGTGGCCGCCCTCACACCCCGGGCC
GAAATCGAAGGCGAGATGGGCGACCAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACAGC
CACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AAACCACCACGGGCGGCAATGCGTTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGCACCGGCACCATCAAGAAG
GGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCTCCATTCAAGACCGCCGAGTT
CGACATCCTCTTCGGCGAAGGCATCTCGCGCGAAGGTGAAATCCTGGACATGGGCGTCAACGCCAAGATCCTCGACAAGT
CGGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCTCGCGAATTCCTGCGCGAGAACAGC
GGCCTGGCCGTGGAGATCGAGAACAAGGTGCGCGACAGCCTGGGCATCGCCCTGCTGCCCACGGCCGGTGGCGATGCCCC
CGAAGCCAAGGCCGCCAAGGCGGGCAAGGCCAAGGCCGACAAGGACGGCGTGATCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210VWF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.21

85.559

0.695
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Neisseria gonorrhoeae strain FA1090

67.919

94.278

0.64
  recA Neisseria gonorrhoeae MS11

67.919

94.278

0.64
  recA Glaesserella parasuis strain SC1401

70.06

91.008

0.638
  recA Pseudomonas stutzeri DSM 10701

70.859

88.828

0.629
  recA Acinetobacter baumannii D1279779

70.245

88.828

0.624
  recA Acinetobacter baylyi ADP1

69.939

88.828

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

88.828

0.616
  recA Vibrio cholerae strain A1552

69.325

88.828

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.172

91.826

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

89.646

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Streptococcus mutans UA159

58.611

98.093

0.575
  recA Helicobacter pylori 26695

64.329

89.373

0.575
  recA Helicobacter pylori strain NCTC11637

64.329

89.373

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90.736

0.572
  recA Streptococcus pyogenes NZ131

62.614

89.646

0.561
  recA Streptococcus pneumoniae D39

61.631

90.191

0.556
  recA Streptococcus pneumoniae TIGR4

61.631

90.191

0.556
  recA Streptococcus pneumoniae Rx1

61.631

90.191

0.556
  recA Streptococcus pneumoniae R6

61.631

90.191

0.556
  recA Streptococcus mitis SK321

61.329

90.191

0.553
  recA Streptococcus mitis NCTC 12261

61.329

90.191

0.553
  recA Lactococcus lactis subsp. cremoris KW2

61.329

90.191

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.76

90.736

0.542

Multiple sequence alignment