Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSEFU_RS06680 Genome accession   NC_015556
Coordinates   1451899..1452948 (+) Length   349 a.a.
NCBI ID   WP_013790433.1    Uniprot ID   F6AEG9
Organism   Pseudomonas fulva 12-X     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446899..1457948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS06660 (Psefu_1322) - 1447277..1447633 (+) 357 WP_013790429.1 PilZ domain-containing protein -
  PSEFU_RS06665 (Psefu_1323) fdxA 1448186..1448509 (-) 324 WP_013790430.1 ferredoxin FdxA -
  PSEFU_RS06670 (Psefu_1324) mutS 1448651..1451224 (-) 2574 WP_013790431.1 DNA mismatch repair protein MutS -
  PSEFU_RS06675 (Psefu_1325) - 1451303..1451815 (+) 513 WP_013790432.1 CinA family protein -
  PSEFU_RS06680 (Psefu_1326) recA 1451899..1452948 (+) 1050 WP_013790433.1 recombinase RecA Machinery gene
  PSEFU_RS06685 (Psefu_1327) recX 1452948..1453412 (+) 465 WP_013790434.1 recombination regulator RecX -
  PSEFU_RS06690 (Psefu_1328) - 1453492..1454553 (-) 1062 WP_013790435.1 LOG family protein -
  PSEFU_RS06695 (Psefu_1329) - 1454604..1455005 (-) 402 WP_013790436.1 quorum-sensing-regulated virulence factor family protein -
  PSEFU_RS06700 (Psefu_1330) - 1455241..1455951 (+) 711 WP_013790437.1 tRNA-uridine aminocarboxypropyltransferase -
  PSEFU_RS06705 (Psefu_1331) - 1455935..1456831 (-) 897 WP_013790438.1 DMT family transporter -
  PSEFU_RS06710 (Psefu_1332) erdR 1456987..1457637 (+) 651 WP_013790439.1 response regulator transcription factor ErdR -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37294.70 Da        Isoelectric Point: 5.5400

>NTDB_id=40766 PSEFU_RS06680 WP_013790433.1 1451899..1452948(+) (recA) [Pseudomonas fulva 12-X]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQKAGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYKGNKIGQGKANAAKFLEDNQEVAREIEG
QIRDKLLVVSGPAKANAPASDLVDTEADF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=40766 PSEFU_RS06680 WP_013790433.1 1451899..1452948(+) (recA) [Pseudomonas fulva 12-X]
ATGGACGAGAACAAGAAGCGCGCGTTGGCGGCTGCCTTGGGCCAGATCGAGAAACAGTTCGGCAAGGGCGCGGTCATGCG
CATGGGCGATCATGACCGTCAGGCCATTCCGGCCATCTCCACCGGCTCCCTGGGCCTGGATATCGCGCTTGGCATTGGCG
GCTTGCCGAAGGGCCGGATCGTGGAAATCTACGGCCCGGAATCCTCGGGTAAGACCACGCTGACCCTGCAGGTCATCGCC
GAAGCCCAGAAGGCCGGCGCCACCTGCGCCTTCGTTGACGCCGAGCACGCGCTGGATCCGGACTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCATCGTCGACTCCGTGGCTGCTCTGGTGCCGAAAGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAAATCACCGGCAACATCAAGAACGCCAACTGCTT
GGTGATCTTCATCAACCAGATTCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACTGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTTCGCCTCGACATCCGCCGCACTGGCGCGGTGAAAGAGGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTATCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGACCTCGGCGTGCAGCAGGGCCTGGTCGAGAAATCCGGTGCCTGGTACAGCTACAAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAATCAGGAAGTGGCCCGTGAGATCGAAGGT
CAGATCCGCGACAAGCTGCTGGTGGTTTCCGGCCCTGCCAAGGCCAACGCGCCGGCCAGTGACCTGGTGGATACCGAAGC
GGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6AEG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.329

99.14

0.905
  recA Acinetobacter baylyi ADP1

73.926

100

0.739
  recA Acinetobacter baumannii D1279779

76.596

94.269

0.722
  recA Glaesserella parasuis strain SC1401

70.317

99.427

0.699
  recA Vibrio cholerae strain A1552

74.006

93.696

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.696

0.693
  recA Ralstonia pseudosolanacearum GMI1000

75.241

89.112

0.67
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.837

0.662
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.696

0.607
  recA Helicobacter pylori strain NCTC11637

63.609

93.696

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.702

0.59
  recA Helicobacter pylori 26695

62.997

93.696

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.977

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.267

98.567

0.564
  recA Streptococcus mitis SK321

55.62

99.427

0.553
  recA Streptococcus mutans UA159

59.077

93.123

0.55
  recA Streptococcus pneumoniae Rx1

57.704

94.842

0.547
  recA Streptococcus mitis NCTC 12261

57.704

94.842

0.547
  recA Streptococcus pneumoniae D39

57.704

94.842

0.547
  recA Streptococcus pneumoniae R6

57.704

94.842

0.547
  recA Streptococcus pneumoniae TIGR4

57.704

94.842

0.547
  recA Streptococcus pyogenes NZ131

57.622

93.983

0.542
  recA Lactococcus lactis subsp. cremoris KW2

56.966

92.55

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.41

0.521

Multiple sequence alignment