Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | GPW86_RS15035 | Genome accession | NZ_CP046742 |
| Coordinates | 1952804..1953868 (+) | Length | 354 a.a. |
| NCBI ID | WP_000344154.1 | Uniprot ID | A0A0K9UMZ1 |
| Organism | Vibrio cholerae strain 3523-03 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1903053..1958894 | 1952804..1953868 | within | 0 |
Gene organization within MGE regions
Location: 1903053..1958894
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW86_RS14790 | - | 1903053..1903430 (-) | 378 | WP_071179079.1 | hypothetical protein | - |
| GPW86_RS14795 | - | 1903402..1903971 (-) | 570 | WP_071179080.1 | GNAT family N-acetyltransferase | - |
| GPW86_RS14800 | - | 1903971..1905161 (-) | 1191 | WP_071179081.1 | hypothetical protein | - |
| GPW86_RS14805 | - | 1905391..1905746 (-) | 356 | Protein_1644 | tyrosine-type recombinase/integrase | - |
| GPW86_RS14810 | - | 1906598..1907818 (-) | 1221 | WP_071187285.1 | hypothetical protein | - |
| GPW86_RS14815 | - | 1908323..1908958 (+) | 636 | WP_071187946.1 | inovirus Gp2 family protein | - |
| GPW86_RS14820 | - | 1909023..1909691 (+) | 669 | WP_123011317.1 | inovirus Gp2 family protein | - |
| GPW86_RS14825 | - | 1909752..1910348 (+) | 597 | WP_123011318.1 | inovirus-type Gp2 protein | - |
| GPW86_RS14830 | - | 1910413..1910613 (+) | 201 | WP_001211744.1 | AlpA family transcriptional regulator | - |
| GPW86_RS14835 | - | 1911355..1913907 (+) | 2553 | WP_123011319.1 | LysM peptidoglycan-binding domain-containing protein | - |
| GPW86_RS14840 | - | 1914407..1914634 (-) | 228 | WP_123011320.1 | hypothetical protein | - |
| GPW86_RS14845 | - | 1914682..1915050 (-) | 369 | WP_123011321.1 | hypothetical protein | - |
| GPW86_RS14850 | - | 1915081..1915815 (-) | 735 | WP_119788842.1 | WYL domain-containing protein | - |
| GPW86_RS14855 | - | 1915954..1916130 (-) | 177 | WP_114729912.1 | hypothetical protein | - |
| GPW86_RS14860 | - | 1916134..1916577 (-) | 444 | WP_123011322.1 | DUF2787 domain-containing protein | - |
| GPW86_RS14865 | - | 1916628..1917065 (-) | 438 | WP_184476174.1 | DUF2787 domain-containing protein | - |
| GPW86_RS14870 | radC | 1917062..1917535 (-) | 474 | WP_123011324.1 | DNA repair protein RadC | - |
| GPW86_RS14875 | - | 1917727..1919223 (+) | 1497 | WP_001961454.1 | ATP-binding protein | - |
| GPW86_RS14880 | - | 1919220..1921931 (+) | 2712 | WP_123011325.1 | Z1 domain-containing protein | - |
| GPW86_RS14885 | - | 1921924..1922874 (+) | 951 | WP_123011326.1 | PD-(D/E)XK motif protein | - |
| GPW86_RS14890 | - | 1922877..1924943 (+) | 2067 | WP_001961449.1 | AIPR family protein | - |
| GPW86_RS14895 | - | 1925076..1926620 (+) | 1545 | WP_123011327.1 | DNA cytosine methyltransferase | - |
| GPW86_RS14900 | - | 1926887..1928128 (-) | 1242 | WP_123011328.1 | integrase domain-containing protein | - |
| GPW86_RS14910 | rpoD | 1928514..1930391 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| GPW86_RS14915 | dnaG | 1930490..1932253 (-) | 1764 | WP_123011329.1 | DNA primase | - |
| GPW86_RS14920 | - | 1932343..1932786 (-) | 444 | WP_001173892.1 | GatB/YqeY domain-containing protein | - |
| GPW86_RS14925 | rpsU | 1932816..1933031 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| GPW86_RS14930 | tsaD | 1933272..1934290 (+) | 1019 | Protein_1668 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| GPW86_RS14935 | - | 1934444..1935255 (+) | 812 | Protein_1669 | alpha/beta fold hydrolase | - |
| GPW86_RS14940 | plsY | 1935304..1935930 (-) | 627 | WP_033933160.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| GPW86_RS14945 | folB | 1936119..1936472 (+) | 354 | WP_000361952.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| GPW86_RS14950 | folK | 1936469..1936975 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| GPW86_RS14955 | - | 1936972..1937775 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| GPW86_RS14960 | ftsB | 1937890..1938174 (+) | 285 | WP_033933161.1 | cell division protein FtsB | - |
| GPW86_RS14965 | ispD | 1938171..1938869 (+) | 699 | WP_033933162.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| GPW86_RS14970 | ispF | 1938866..1939342 (+) | 477 | WP_033933163.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| GPW86_RS14975 | truD | 1939372..1940457 (+) | 1086 | WP_069212455.1 | tRNA pseudouridine(13) synthase TruD | - |
| GPW86_RS14980 | surE | 1940459..1941211 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| GPW86_RS14985 | - | 1941204..1941830 (+) | 627 | WP_057550676.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| GPW86_RS14990 | nlpD | 1941830..1942765 (+) | 936 | WP_095461793.1 | murein hydrolase activator NlpD | - |
| GPW86_RS14995 | rpoS | 1942839..1943846 (+) | 1008 | WP_123011330.1 | RNA polymerase sigma factor RpoS | Regulator |
| GPW86_RS15000 | mutS | 1943940..1946528 (-) | 2589 | WP_001934677.1 | DNA mismatch repair protein MutS | - |
| GPW86_RS15005 | cysM | 1946796..1947683 (-) | 888 | WP_123011331.1 | cysteine synthase CysM | - |
| GPW86_RS15010 | cysP | 1948066..1949067 (+) | 1002 | WP_123011332.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| GPW86_RS15015 | cysT | 1949144..1949995 (+) | 852 | WP_123011333.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| GPW86_RS15020 | cysW | 1950007..1950870 (+) | 864 | WP_123011334.1 | sulfate ABC transporter permease subunit CysW | - |
| GPW86_RS15025 | - | 1950867..1951997 (+) | 1131 | WP_002051153.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| GPW86_RS15030 | pncC | 1952164..1952670 (+) | 507 | WP_123011335.1 | nicotinamide-nucleotide amidase | - |
| GPW86_RS15035 | recA | 1952804..1953868 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| GPW86_RS15040 | recX | 1954001..1954459 (+) | 459 | WP_123011336.1 | recombination regulator RecX | - |
| GPW86_RS15045 | alaS | 1954632..1957214 (+) | 2583 | WP_000481019.1 | alanine--tRNA ligase | - |
| GPW86_RS15050 | - | 1957418..1958605 (+) | 1188 | WP_001885701.1 | aspartate kinase | - |
| GPW86_RS15055 | csrA | 1958697..1958894 (+) | 198 | WP_000906485.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38249.92 Da Isoelectric Point: 5.0766
>NTDB_id=406978 GPW86_RS15035 WP_000344154.1 1952804..1953868(+) (recA) [Vibrio cholerae strain 3523-03]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
Nucleotide
Download Length: 1065 bp
>NTDB_id=406978 GPW86_RS15035 WP_000344154.1 1952804..1953868(+) (recA) [Vibrio cholerae strain 3523-03]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGTGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGCAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAACTGGG
CGTCAATATCGATGAACTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCGCTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTTGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGGCTACAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTCACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCGCCGTTTAAAGAAGCCAATACTCAAATTATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGTGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGCAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAACTGGG
CGTCAATATCGATGAACTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCGCTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTTGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGGCTACAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTCACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCGCCGTTTAAAGAAGCCAATACTCAAATTATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.