Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PAASB05_RS04240 Genome accession   NZ_CP046722
Coordinates   908788..909855 (+) Length   355 a.a.
NCBI ID   WP_010248510.1    Uniprot ID   A0A2S1CTT3
Organism   Pantoea agglomerans strain ASB05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903788..914855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAASB05_RS04210 (PAASB05_04210) narI 903901..904578 (+) 678 WP_022623789.1 respiratory nitrate reductase subunit gamma -
  PAASB05_RS04215 (PAASB05_04215) mltB 904728..905810 (+) 1083 WP_031594452.1 lytic murein transglycosylase B -
  PAASB05_RS04220 (PAASB05_04220) - 905891..906226 (+) 336 WP_033770017.1 zinc ribbon domain-containing protein YjdM -
  PAASB05_RS04225 (PAASB05_04225) - 906261..907148 (-) 888 WP_060680816.1 dihydrodipicolinate synthase family protein -
  PAASB05_RS04230 (PAASB05_04230) tam 907316..908092 (+) 777 WP_033770048.1 trans-aconitate 2-methyltransferase -
  PAASB05_RS04235 (PAASB05_04235) pncC 908198..908692 (+) 495 WP_010672121.1 nicotinamide-nucleotide amidase -
  PAASB05_RS04240 (PAASB05_04240) recA 908788..909855 (+) 1068 WP_010248510.1 recombinase RecA Machinery gene
  PAASB05_RS04245 (PAASB05_04245) - 909979..910497 (+) 519 WP_010248508.1 regulatory protein RecX -
  PAASB05_RS04250 (PAASB05_04250) alaS 910631..913258 (+) 2628 WP_010672120.1 alanine--tRNA ligase -
  PAASB05_RS04255 (PAASB05_04255) csrA 913509..913694 (+) 186 WP_008927091.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37909.41 Da        Isoelectric Point: 5.0616

>NTDB_id=406721 PAASB05_RS04240 WP_010248510.1 908788..909855(+) (recA) [Pantoea agglomerans strain ASB05]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKSNAGNFLKENAAVANEI
DLKLREMLLNGADEKLAAADKAAEKEDAAEANEDF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=406721 PAASB05_RS04240 WP_010248510.1 908788..909855(+) (recA) [Pantoea agglomerans strain ASB05]
ATGGCGATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTTGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACTATCTCTACCGGCTCGCTGTCGCTGGATATCGCATTAGGCG
CAGGCGGTCTGCCAATGGGCCGTATCGTTGAGATCTACGGACCTGAGTCTTCAGGTAAAACCACGCTGACTTTGCAGGTT
ATCGCATCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCAGAACATGCGCTTGATCCGGTTTACGCCAAGAA
ACTCGGCGTAGACATTGATAACCTGCTCTGCTCTCAGCCAGACACTGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCTGGTGCCGTTGACGTGATCATCGTCGACTCCGTCGCGGCGCTGACGCCTAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCACACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
TACCCTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACCACTGGTGGTA
ACGCGCTGAAGTTCTACGCCTCTGTCCGTCTTGATATCCGCCGTATCGGTGCAATTAAAGAGGGCGATAACGTGGTCGGC
AGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTCAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGTATCAATACCTTTGGTGAGCTGGTCGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAATGGCGACAAGATTGGTCAGGGTAAATCGAATGCCGGCAACTTCCTGAAAGAGAATGCTGCTGTGGCAAACGAGATT
GATCTGAAGTTACGTGAGATGTTGCTCAACGGCGCGGATGAAAAACTCGCAGCAGCCGACAAGGCTGCTGAGAAAGAAGA
CGCGGCTGAAGCGAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1CTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.284

96.056

0.8
  recA Vibrio cholerae strain A1552

83.284

96.056

0.8
  recA Acinetobacter baylyi ADP1

70.201

98.31

0.69
  recA Acinetobacter baumannii D1279779

72.754

94.085

0.685
  recA Pseudomonas stutzeri DSM 10701

74.006

92.113

0.682
  recA Glaesserella parasuis strain SC1401

67.806

98.873

0.67
  recA Neisseria gonorrhoeae strain FA1090

67.771

93.521

0.634
  recA Neisseria gonorrhoeae MS11

67.771

93.521

0.634
  recA Neisseria gonorrhoeae MS11

67.771

93.521

0.634
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62
  recA Helicobacter pylori strain NCTC11637

62.018

94.93

0.589
  recA Helicobacter pylori 26695

61.721

94.93

0.586
  recA Streptococcus mitis NCTC 12261

59.884

96.901

0.58
  recA Lactococcus lactis subsp. cremoris KW2

62.848

90.986

0.572
  recA Streptococcus mitis SK321

62.539

90.986

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.423

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.846

91.549

0.566
  recA Streptococcus pyogenes NZ131

61.846

91.549

0.566
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Streptococcus pneumoniae Rx1

61.92

90.986

0.563
  recA Streptococcus pneumoniae D39

61.92

90.986

0.563
  recA Streptococcus pneumoniae R6

61.92

90.986

0.563
  recA Streptococcus pneumoniae TIGR4

61.92

90.986

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

89.859

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.252

89.296

0.538

Multiple sequence alignment