Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJB62_RS25030 Genome accession   NZ_CP046703
Coordinates   6040405..6041484 (+) Length   359 a.a.
NCBI ID   WP_114082455.1    Uniprot ID   A0A6P1KYW2
Organism   Nostoc sp. ATCC 53789     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6035405..6046484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJB62_RS25010 (GJB62_24905) xseB 6037780..6038013 (-) 234 WP_114082459.1 exodeoxyribonuclease VII small subunit -
  GJB62_RS25015 (GJB62_24910) xseA 6038056..6039291 (-) 1236 WP_114082458.1 exodeoxyribonuclease VII large subunit -
  GJB62_RS25020 (GJB62_24915) - 6039352..6039633 (-) 282 WP_114082457.1 type II toxin-antitoxin system RelE/ParE family toxin -
  GJB62_RS25025 (GJB62_24920) - 6039620..6039913 (-) 294 WP_245245998.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GJB62_RS25030 (GJB62_24925) recA 6040405..6041484 (+) 1080 WP_114082455.1 recombinase RecA Machinery gene
  GJB62_RS25035 (GJB62_24930) - 6041704..6042426 (-) 723 WP_181852853.1 FHA domain-containing protein -
  GJB62_RS25040 (GJB62_24935) - 6043015..6044619 (-) 1605 WP_114082453.1 serine/threonine-protein kinase -
  GJB62_RS25045 (GJB62_24940) - 6045023..6045853 (-) 831 WP_114082451.1 phytoene/squalene synthase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38587.01 Da        Isoelectric Point: 4.9060

>NTDB_id=406680 GJB62_RS25030 WP_114082455.1 6040405..6041484(+) (recA) [Nostoc sp. ATCC 53789]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCIVDLAEETSIIVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
EIKKLVREKLDKGAVVSANSVAKASEEDEEEEVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=406680 GJB62_RS25030 WP_114082455.1 6040405..6041484(+) (recA) [Nostoc sp. ATCC 53789]
ATGGCTATCAACACCGATACTTCCGGCAAGCAAAAAGCACTGACTATGGTGCTAAACCAGATTGAGCGCAGCTTTGGTAA
AGGGGCAATCATGCGCCTGGGCGATGCTACCCGGATGCGGGTGGAAACAATTTCTAGTGGGGCGCTTACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTAATAGAAATTTATGGGCCGGAAAGTTCCGGTAAGACTACAGTAGCGCTA
CATGCGCTCGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTTGTTGATGCTGAACACGCCCTTGATCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCTCAACCTGACACTGGCGAATCAGCTTTAGAAATTGTCGATC
AACTTGTACGCTCTGCTGCGGTTGATATTGTAGTCATAGACTCAGTAGCAGCACTGGTTCCCCGTGCTGAAATTGAAGGC
GATATGGGTGATATTCACGTTGGTTTGCAAGCGCGGTTAATGAGCCAAGCCCTACGTAAAATTACGGGCAACATTGGTAA
ATCTGGTTGTACAGTAATTTTCATTAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACCACGACTG
GAGGTAATGCATTGAAATTTTACGCTTCGGTGCGCTTGGATATTCGTCGAATTCAAACCTTGAAGAAAGGTACAGATGAA
TTTGGTAATCGCGTTAAAGTCAAAGTCGCCAAGAATAAAGTAGCGCCGCCCTTCAGAATAGCGGAATTTGACATTATTTT
TGGTAAAGGGATTTCTACCTTGGGTTGTATTGTAGACTTGGCAGAAGAAACTTCCATTATTGTCCGCAAGGGGGCTTGGT
ATAGTTACAACGGCGATAATATCTCCCAAGGACGAGACAACGCCATTAAGTATCTAGAAGAAAAGCCTGAATTTGCTGAA
GAAATTAAGAAACTGGTGCGTGAAAAGTTAGATAAAGGCGCTGTTGTTTCTGCTAACTCTGTAGCTAAAGCCAGTGAAGA
AGATGAAGAGGAAGAAGTTGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1KYW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.401

96.657

0.613
  recA Acinetobacter baumannii D1279779

62.931

96.936

0.61
  recA Pseudomonas stutzeri DSM 10701

63.824

94.708

0.604
  recA Neisseria gonorrhoeae MS11

60.907

98.329

0.599
  recA Neisseria gonorrhoeae MS11

60.907

98.329

0.599
  recA Neisseria gonorrhoeae strain FA1090

60.907

98.329

0.599
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.201

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.253

92.479

0.585
  recA Streptococcus pneumoniae D39

58.31

98.886

0.577
  recA Streptococcus pneumoniae R6

58.31

98.886

0.577
  recA Streptococcus pneumoniae Rx1

58.31

98.886

0.577
  recA Streptococcus pneumoniae TIGR4

58.31

98.886

0.577
  recA Helicobacter pylori 26695

61.747

92.479

0.571
  recA Helicobacter pylori strain NCTC11637

61.747

92.479

0.571
  recA Glaesserella parasuis strain SC1401

58.908

96.936

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

57.746

98.886

0.571
  recA Streptococcus mitis NCTC 12261

57.465

98.886

0.568
  recA Streptococcus pyogenes NZ131

57.79

98.329

0.568
  recA Streptococcus mutans UA159

58.501

96.657

0.565
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.551

96.1

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

91.365

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.443

89.972

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment