Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HALHY_RS12540 Genome accession   NC_015510
Coordinates   3199197..3200258 (+) Length   353 a.a.
NCBI ID   WP_013764913.1    Uniprot ID   -
Organism   Haliscomenobacter hydrossis DSM 1100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3194197..3205258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HALHY_RS12515 (Halhy_2486) - 3194521..3195330 (-) 810 WP_013764908.1 class I SAM-dependent methyltransferase -
  HALHY_RS12520 (Halhy_2487) - 3195389..3196249 (-) 861 WP_052324454.1 lycopene cyclase domain-containing protein -
  HALHY_RS12525 (Halhy_2488) - 3196254..3197090 (-) 837 WP_013764910.1 phytoene/squalene synthase family protein -
  HALHY_RS12530 (Halhy_2489) - 3197114..3198586 (-) 1473 WP_013764911.1 phytoene desaturase family protein -
  HALHY_RS12535 (Halhy_2490) - 3198790..3199029 (+) 240 WP_013764912.1 hypothetical protein -
  HALHY_RS12540 (Halhy_2491) recA 3199197..3200258 (+) 1062 WP_013764913.1 recombinase RecA Machinery gene
  HALHY_RS12545 (Halhy_2492) - 3200323..3201069 (-) 747 WP_013764914.1 isoprenyl transferase -
  HALHY_RS12550 (Halhy_2493) - 3201280..3202974 (+) 1695 WP_044234990.1 M3 family oligoendopeptidase -
  HALHY_RS12555 (Halhy_2494) - 3203022..3204104 (+) 1083 WP_013764916.1 glycosyltransferase family 4 protein -
  HALHY_RS37460 - 3204236..3204409 (+) 174 WP_169315674.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38052.65 Da        Isoelectric Point: 5.3518

>NTDB_id=40665 HALHY_RS12540 WP_013764913.1 3199197..3200258(+) (recA) [Haliscomenobacter hydrossis DSM 1100]
MSQLDKDQKLKALQLTMDRLDKTYGKGTVMRLGDKQVSYVDVISTGSIGLDVALGINGLPKGRIVEIYGPESSGKTTLAI
HAIAECQKQGGIAAIVDAEHAFDRFYAEKLGVKTDELLISQPDNGEQALEIVENLIRSGAIDIIVVDSVAALVPRSEIEG
EMGDSKVGVQARLMSQAMRKLTGSIGRTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASIRLDIRKSGAAIKDKDG
NVVGNQVKVTVKKNKLAPPFRVATFDIVFGEGISKAGETVDMGVDYEVIQKSGAWYSYNGAKIAQGREAAKQFLLDNPEM
GAELELKIKEKLLSNPEAIKIVPAAGARDDDDE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=40665 HALHY_RS12540 WP_013764913.1 3199197..3200258(+) (recA) [Haliscomenobacter hydrossis DSM 1100]
ATGTCGCAACTGGACAAAGACCAAAAATTAAAAGCCCTCCAACTTACCATGGATCGTTTGGACAAAACCTACGGTAAGGG
TACGGTCATGCGTTTGGGAGACAAGCAAGTAAGCTATGTCGATGTAATTTCCACTGGCTCAATTGGCTTGGATGTCGCCC
TAGGGATCAATGGTTTACCCAAAGGCCGGATCGTAGAAATTTATGGCCCGGAATCTTCTGGTAAAACCACATTGGCTATT
CACGCCATTGCAGAATGTCAAAAACAAGGCGGTATAGCCGCAATTGTGGATGCGGAACACGCTTTTGACCGTTTTTACGC
CGAAAAACTGGGGGTAAAAACCGATGAGTTGTTGATTTCTCAGCCTGACAATGGTGAACAAGCACTCGAAATTGTTGAAA
ACCTGATCCGTTCTGGAGCAATCGACATTATAGTAGTGGACTCCGTAGCTGCTTTGGTTCCCCGCAGTGAAATTGAAGGA
GAAATGGGTGACTCTAAAGTGGGTGTACAAGCCCGCCTGATGTCACAGGCCATGCGTAAACTCACCGGTAGCATTGGCAG
AACCAACTGCTGCTGCATCTTCATCAACCAGTTGCGCGAAAAAATTGGGGTGATGTTTGGCAATCCGGAGACCACTACGG
GGGGTAATGCCCTCAAATTTTATGCCTCCATACGCCTTGATATCCGCAAATCAGGTGCTGCCATCAAAGACAAAGACGGC
AATGTGGTCGGCAACCAGGTGAAGGTAACCGTGAAGAAAAATAAATTGGCTCCTCCTTTCCGCGTCGCTACTTTTGACAT
CGTGTTTGGTGAAGGTATCTCCAAAGCAGGTGAAACGGTCGATATGGGAGTAGATTATGAGGTCATCCAAAAGAGTGGTG
CCTGGTACAGCTACAATGGAGCCAAAATTGCCCAGGGTCGTGAGGCCGCCAAGCAGTTCTTACTGGACAATCCTGAAATG
GGTGCAGAGCTGGAGCTCAAAATCAAGGAAAAACTTTTATCCAATCCTGAAGCCATCAAAATTGTGCCCGCTGCTGGTGC
ACGTGATGATGACGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

93.484

0.618
  recA Pseudomonas stutzeri DSM 10701

59.599

98.867

0.589
  recA Ralstonia pseudosolanacearum GMI1000

64.669

89.802

0.581
  recA Acinetobacter baylyi ADP1

62.5

92.918

0.581
  recA Vibrio cholerae strain A1552

58.79

98.3

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.79

98.3

0.578
  recA Neisseria gonorrhoeae MS11

62.963

91.785

0.578
  recA Neisseria gonorrhoeae MS11

62.963

91.785

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.963

91.785

0.578
  recA Helicobacter pylori strain NCTC11637

60.177

96.034

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

92.635

0.575
  recA Glaesserella parasuis strain SC1401

58

99.15

0.575
  recA Helicobacter pylori 26695

59.882

96.034

0.575
  recA Acinetobacter baumannii D1279779

61.585

92.918

0.572
  recA Streptococcus mutans UA159

60.55

92.635

0.561
  recA Streptococcus mitis SK321

60.123

92.351

0.555
  recA Streptococcus pyogenes NZ131

59.271

93.201

0.552
  recA Streptococcus mitis NCTC 12261

59.816

92.351

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

60

90.652

0.544
  recA Streptococcus pneumoniae D39

58.232

92.918

0.541
  recA Streptococcus pneumoniae Rx1

58.232

92.918

0.541
  recA Streptococcus pneumoniae R6

58.232

92.918

0.541
  recA Streptococcus pneumoniae TIGR4

58.232

92.918

0.541
  recA Lactococcus lactis subsp. cremoris KW2

58.385

91.218

0.533
  recA Latilactobacillus sakei subsp. sakei 23K

57.362

92.351

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.938

91.785

0.504

Multiple sequence alignment