Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPJ68_RS19290 Genome accession   NZ_CP046673
Coordinates   3968623..3969687 (-) Length   354 a.a.
NCBI ID   WP_016154166.1    Uniprot ID   R8WPE0
Organism   Citrobacter sp. 172116965     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3963623..3974687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPJ68_RS19275 (GPJ68_19275) csrA 3964873..3965058 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  GPJ68_RS19280 (GPJ68_19280) alaS 3965297..3967924 (-) 2628 WP_016157306.1 alanine--tRNA ligase -
  GPJ68_RS19285 (GPJ68_19285) recX 3968053..3968553 (-) 501 WP_016157307.1 recombination regulator RecX -
  GPJ68_RS19290 (GPJ68_19290) recA 3968623..3969687 (-) 1065 WP_016154166.1 recombinase RecA Machinery gene
  GPJ68_RS19295 (GPJ68_19295) pncC 3969780..3970277 (-) 498 WP_016154167.1 nicotinamide-nucleotide amidase -
  GPJ68_RS19300 (GPJ68_19300) mltB 3970469..3971548 (-) 1080 WP_032947148.1 lytic murein transglycosylase B -
  GPJ68_RS19305 (GPJ68_19305) srlA 3971813..3972376 (+) 564 WP_016154169.1 PTS glucitol/sorbitol transporter subunit IIC -
  GPJ68_RS19310 (GPJ68_19310) - 3972373..3973344 (+) 972 WP_016157309.1 PTS glucitol/sorbitol transporter subunit IIB -
  GPJ68_RS19315 (GPJ68_19315) srlB 3973358..3973720 (+) 363 WP_053389534.1 PTS glucitol/sorbitol transporter subunit IIA -
  GPJ68_RS19320 (GPJ68_19320) srlD 3973738..3974517 (+) 780 WP_003037345.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38157.53 Da        Isoelectric Point: 4.8211

>NTDB_id=406633 GPJ68_RS19290 WP_016154166.1 3968623..3969687(-) (recA) [Citrobacter sp. 172116965]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKVRELLLNNPDSKPDFSVDDSGEDVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=406633 GPJ68_RS19290 WP_016154166.1 3968623..3969687(-) (recA) [Citrobacter sp. 172116965]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTTGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACCCTGCAGGTT
ATTGCTGCCGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCGGAACACGCACTGGATCCCGTCTATGCGCGCAA
GCTTGGCGTTGATATCGACAACCTGCTGTGCTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCCGAAATCGAAGGCGAGATT
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCCATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTACTGATTTTCATTAACCAGATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCCCTGAAATTCTATGCTTCTGTTCGCCTGGATATCCGTCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTTGGT
AGCGAAACCCGTGTTAAGGTCGTGAAAAACAAAATTGCCGCACCGTTCAAACAGGCTGAATTCCAGATTCTTTACGGTGA
AGGTATCAACTTCTACGGCGAACTGGTTGATTTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGCGCATGGTACAGCT
ACAACGGTGAGAAAATTGGTCAGGGTAAAGCGAATGCCACTAACTGGCTGAAGGAAAACCCGGCAACGGCGAAGGAAATT
GAGAAGAAAGTACGCGAGTTACTGCTCAATAACCCGGATTCAAAACCAGACTTCTCTGTTGATGACAGCGGTGAAGATGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8WPE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.503

97.74

0.797
  recA Vibrio cholerae strain A1552

81.503

97.74

0.797
  recA Pseudomonas stutzeri DSM 10701

73.021

96.328

0.703
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baylyi ADP1

74.39

92.655

0.689
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.983

0.63
  recA Latilactobacillus sakei subsp. sakei 23K

58.146

100

0.585
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.243

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.678

0.554

Multiple sequence alignment