Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOQ09_RS25565 Genome accession   NZ_CP046622
Coordinates   5477138..5478256 (-) Length   372 a.a.
NCBI ID   WP_157616434.1    Uniprot ID   A0A6I6HQ80
Organism   Variovorax paradoxus strain CSUSB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5472138..5483256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ09_RS25540 (GOQ09_25530) sucD 5472542..5473435 (-) 894 WP_007828710.1 succinate--CoA ligase subunit alpha -
  GOQ09_RS25545 (GOQ09_25535) sucC 5473446..5474612 (-) 1167 WP_157616430.1 ADP-forming succinate--CoA ligase subunit beta -
  GOQ09_RS25550 (GOQ09_25540) argC 5474819..5475742 (+) 924 WP_157616431.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  GOQ09_RS25555 (GOQ09_25545) - 5475764..5476495 (-) 732 WP_157616432.1 hypothetical protein -
  GOQ09_RS25560 (GOQ09_25550) recX 5476618..5477088 (-) 471 WP_157616433.1 recombination regulator RecX -
  GOQ09_RS25565 (GOQ09_25555) recA 5477138..5478256 (-) 1119 WP_157616434.1 recombinase RecA Machinery gene
  GOQ09_RS25570 (GOQ09_25560) - 5478402..5478887 (+) 486 WP_157616435.1 helix-turn-helix domain-containing protein -
  GOQ09_RS25575 (GOQ09_25565) - 5478955..5479629 (+) 675 WP_157616436.1 response regulator transcription factor -
  GOQ09_RS25580 (GOQ09_25570) - 5479668..5481113 (+) 1446 WP_157616437.1 sensor histidine kinase -
  GOQ09_RS25585 (GOQ09_25575) - 5481126..5481329 (-) 204 WP_157616438.1 sporulation protein -
  GOQ09_RS25590 (GOQ09_25580) - 5481338..5482162 (-) 825 WP_157616439.1 biotin--[acetyl-CoA-carboxylase] ligase -
  GOQ09_RS25595 (GOQ09_25585) - 5482165..5482794 (-) 630 WP_157616440.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39552.43 Da        Isoelectric Point: 5.2297

>NTDB_id=406126 GOQ09_RS25565 WP_157616434.1 5477138..5478256(-) (recA) [Variovorax paradoxus strain CSUSB]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADADAPAAEKAEKPAKAAKAEKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=406126 GOQ09_RS25565 WP_157616434.1 5477138..5478256(-) (recA) [Variovorax paradoxus strain CSUSB]
ATGGACGCAGTCGTCAAGGGCGCAAGTATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAAGCCGCGCTGGCGCA
AATCGAAAAGCAGTTCGGCAAAGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTCGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCTGAA
TCGTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAAAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCATGCGCTCGACGTGCAATACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCACTGGTGCGCTCGGGCGCTGTCGACCTGATCGTGGTCGACTCGGTGGCCGCG
CTCACCCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGAACGCCA
AGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACGCACGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAAATCGAGAACAAGGTGCGCGAGTCGCTGGGTATTCCGTTGCTGGCGGCCGA
TGCCGACGCCCCGGCCGCCGAAAAGGCCGAGAAGCCTGCGAAGGCAGCCAAGGCCGAGAAGGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6HQ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

91.667

0.745
  recA Pseudomonas stutzeri DSM 10701

69.628

93.817

0.653
  recA Acinetobacter baylyi ADP1

69.364

93.011

0.645
  recA Neisseria gonorrhoeae MS11

71.212

88.71

0.632
  recA Neisseria gonorrhoeae strain FA1090

71.212

88.71

0.632
  recA Neisseria gonorrhoeae MS11

71.212

88.71

0.632
  recA Acinetobacter baumannii D1279779

71.166

87.634

0.624
  recA Glaesserella parasuis strain SC1401

71.605

87.097

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.909

88.441

0.618
  recA Vibrio cholerae strain A1552

69.909

88.441

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.781

88.441

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

88.978

0.591
  recA Helicobacter pylori 26695

65.244

88.172

0.575
  recA Helicobacter pylori strain NCTC11637

65.244

88.172

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.933

92.204

0.562
  recA Streptococcus pyogenes NZ131

62.006

88.441

0.548
  recA Streptococcus mutans UA159

61.818

88.71

0.548
  recA Streptococcus pneumoniae D39

61.329

88.978

0.546
  recA Streptococcus pneumoniae TIGR4

61.329

88.978

0.546
  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.978

0.546
  recA Streptococcus pneumoniae Rx1

61.329

88.978

0.546
  recA Streptococcus pneumoniae R6

61.329

88.978

0.546
  recA Streptococcus mitis SK321

61.027

88.978

0.543
  recA Streptococcus mitis NCTC 12261

61.027

88.978

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.29

0.53

Multiple sequence alignment