Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOY17_RS06610 Genome accession   NZ_CP046603
Coordinates   1437584..1438618 (+) Length   344 a.a.
NCBI ID   WP_157029776.1    Uniprot ID   -
Organism   Lysobacter soli strain XL170     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432584..1443618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY17_RS06595 (GOY17_06595) mutS 1433396..1435972 (-) 2577 WP_198173833.1 DNA mismatch repair protein MutS -
  GOY17_RS06600 (GOY17_06600) - 1436116..1436616 (+) 501 WP_157029775.1 CinA family protein -
  GOY17_RS06605 (GOY17_06605) lexA 1436685..1437341 (+) 657 WP_115840757.1 transcriptional repressor LexA -
  GOY17_RS06610 (GOY17_06610) recA 1437584..1438618 (+) 1035 WP_157029776.1 recombinase RecA Machinery gene
  GOY17_RS06615 (GOY17_06615) recX 1438657..1439163 (+) 507 WP_157029777.1 recombination regulator RecX -
  GOY17_RS06620 (GOY17_06620) alaS 1439490..1442123 (+) 2634 WP_157029778.1 alanine--tRNA ligase -
  GOY17_RS06625 (GOY17_06625) csrA 1442260..1442466 (+) 207 WP_115840753.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37218.67 Da        Isoelectric Point: 5.0694

>NTDB_id=405994 GOY17_RS06610 WP_157029776.1 1437584..1438618(+) (recA) [Lysobacter soli strain XL170]
MDDNKKRALSAALGQIEKQFGKGSVMRMGDRTIEATEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKAGGTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSAYDERIGQGKENARQYLKENPHVAERL
ETALREKFVPAEANRSEEDDGQDD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=405994 GOY17_RS06610 WP_157029776.1 1437584..1438618(+) (recA) [Lysobacter soli strain XL170]
ATGGACGACAACAAGAAGCGCGCGCTCTCAGCCGCACTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGATCGCACGATCGAAGCGACGGAAGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGTGTCGTCGAGATCTATGGCCCGGAATCCTCGGGCAAGACCACCCTCACGCTGCAGGCCATCGCC
CAGTGCCAGAAGGCCGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTCGG
CGTCAACGTCGACGACCTGCTGGTCAGCCAGCCGGACACGGGCGAACAGGCGCTGGAAATCGCCGACATGCTCGTGCGTT
CGGCGGCGGTCGACATGGTCGTGGTCGACTCCGTCGCCGCACTGACGCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCTCGACTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACTGCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGCATCGGTTCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTCGTGAAGAACAAACTGGCCCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTATGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGAGGCCAAGCTGGTCGAGAAGTCCGGCGCCTGGTACAGCG
CGTACGACGAGCGCATCGGGCAGGGCAAGGAAAACGCCCGCCAGTACCTGAAGGAAAATCCGCATGTCGCCGAACGCCTG
GAAACGGCCCTGCGCGAGAAGTTCGTGCCGGCCGAAGCCAACCGCAGCGAGGAAGACGACGGCCAGGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.653

97.093

0.715
  recA Ralstonia pseudosolanacearum GMI1000

72.404

97.965

0.709
  recA Acinetobacter baylyi ADP1

71.176

98.837

0.703
  recA Acinetobacter baumannii D1279779

71.557

97.093

0.695
  recA Vibrio cholerae strain A1552

71.988

96.512

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.988

96.512

0.695
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.632

94.767

0.66
  recA Glaesserella parasuis strain SC1401

65.698

100

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.372

100

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.802

0.61
  recA Helicobacter pylori 26695

62.883

94.767

0.596
  recA Helicobacter pylori strain NCTC11637

62.195

95.349

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

59.649

99.419

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus mutans UA159

58.529

98.837

0.578
  recA Streptococcus mitis SK321

60.061

95.349

0.573
  recA Streptococcus pyogenes NZ131

59.394

95.93

0.57
  recA Streptococcus mitis NCTC 12261

59.756

95.349

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

95.349

0.561

Multiple sequence alignment