Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PT7_RS06590 Genome accession   NC_015458
Coordinates   1463735..1464802 (-) Length   355 a.a.
NCBI ID   WP_013742428.1    Uniprot ID   F4GUR0
Organism   Pusillimonas sp. T7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458735..1469802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT7_RS06570 (PT7_1348) - 1459223..1459792 (-) 570 WP_013742424.1 DUF2889 domain-containing protein -
  PT7_RS06575 (PT7_1349) metE 1459823..1462117 (-) 2295 WP_013742425.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  PT7_RS06580 (PT7_1350) - 1462246..1463166 (+) 921 WP_013742426.1 LysR family transcriptional regulator -
  PT7_RS06585 (PT7_1351) recX 1463163..1463681 (-) 519 WP_013742427.1 recombination regulator RecX -
  PT7_RS06590 (PT7_1352) recA 1463735..1464802 (-) 1068 WP_013742428.1 recombinase RecA Machinery gene
  PT7_RS06595 (PT7_1353) - 1465057..1465746 (+) 690 WP_013742429.1 response regulator transcription factor -
  PT7_RS06600 (PT7_1354) - 1465776..1467275 (+) 1500 WP_013742430.1 sensor histidine kinase -
  PT7_RS06605 (PT7_1356) - 1467496..1469121 (+) 1626 WP_049790389.1 MFS transporter -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38100.47 Da        Isoelectric Point: 5.0465

>NTDB_id=40598 PT7_RS06590 WP_013742428.1 1463735..1464802(-) (recA) [Pusillimonas sp. T7-7]
MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDDTVEHDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGDMGDSLPGLQARLMSQALRKLTANIKRANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKK
GDEIVGNETRVKVVKNKVAPPFKQAEFDIMYGGGISREGEIIDLGVQAGIVDKAGAWFSYSGTRIGQGKDNSREYLKEHP
EMAFEIENRVREQLGVIPQVAANKTVQTTDDELGE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=40598 PT7_RS06590 WP_013742428.1 1463735..1464802(-) (recA) [Pusillimonas sp. T7-7]
ATGGACGACAAAAACAGCAAAGCCGCCGGCGAGCGCAGCAAAGCACTGGCTGCCGCCTTATCTCAGATTGAAAAGCAATT
TGGCAAGGGCTCGGTCATGCGTTATGGCGACGACACTGTTGAACACGATATTCAGGTCGTGTCTACCGGTTCGCTGGGGC
TTGATGTCGCCCTGGGCGTCGGTGGCCTGCCGCGCGGGCGCGTCGTCGAAATCTACGGCCCTGAATCATCAGGTAAAACC
ACCTTGACCCTACAGGTCATTGCCGAAATGCAAAAAATCGGTGGTACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGA
CGTCCAGTACGCCTCCAAGCTGGGCGTCAATCTGGCCGACCTGCTTATTTCACAGCCCGATACCGGCGAGCAGGCGCTTG
AAATCACCGACGCCCTGGTCCGTTCGGGCTCGGTCGACCTTATCGTCATCGACTCGGTTGCCGCCCTGGTACCCAAGGCC
GAAATCGAAGGTGACATGGGCGACTCCCTGCCCGGCCTGCAGGCCCGCCTCATGAGCCAGGCCTTGCGCAAGCTTACCGC
CAACATCAAGCGTGCCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTTGGCAGTCCGG
AAACCACCACCGGCGGCAATGCGCTCAAGTTTTATTCCTCGGTACGGCTCGATATCCGCCGTATCGGCTCCATCAAGAAA
GGCGACGAAATCGTCGGCAACGAAACCCGCGTCAAAGTTGTCAAGAACAAGGTTGCTCCTCCTTTCAAACAAGCAGAATT
CGACATCATGTATGGCGGGGGTATCTCGCGCGAAGGCGAAATCATTGATCTTGGCGTACAGGCTGGTATCGTGGACAAGG
CTGGCGCCTGGTTCAGCTATAGCGGTACGCGTATTGGCCAGGGTAAAGACAACTCCCGCGAATACCTTAAAGAACACCCC
GAAATGGCTTTCGAAATCGAAAATCGCGTACGTGAGCAGTTGGGTGTAATACCGCAGGTAGCAGCCAACAAGACAGTACA
AACCACAGACGACGAGCTCGGAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4GUR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.32

99.437

0.789
  recA Acinetobacter baumannii D1279779

71.554

96.056

0.687
  recA Pseudomonas stutzeri DSM 10701

74.54

91.831

0.685
  recA Acinetobacter baylyi ADP1

73.994

90.986

0.673
  recA Glaesserella parasuis strain SC1401

69.298

96.338

0.668
  recA Neisseria gonorrhoeae MS11

72.086

91.831

0.662
  recA Neisseria gonorrhoeae MS11

72.086

91.831

0.662
  recA Neisseria gonorrhoeae strain FA1090

72.086

91.831

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.207

90.986

0.648
  recA Vibrio cholerae strain A1552

71.207

90.986

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

92.676

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

91.831

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

60.519

97.746

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

91.831

0.592
  recA Helicobacter pylori 26695

64.11

91.831

0.589
  recA Helicobacter pylori strain NCTC11637

63.804

91.831

0.586
  recA Streptococcus pneumoniae D39

59.531

96.056

0.572
  recA Streptococcus pneumoniae TIGR4

59.531

96.056

0.572
  recA Streptococcus pneumoniae R6

59.531

96.056

0.572
  recA Streptococcus pneumoniae Rx1

59.531

96.056

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

90.986

0.572
  recA Streptococcus mitis SK321

59.238

96.056

0.569
  recA Streptococcus mitis NCTC 12261

59.238

96.056

0.569
  recA Streptococcus mutans UA159

59.644

94.93

0.566
  recA Streptococcus pyogenes NZ131

60.79

92.676

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.358

96.056

0.561

Multiple sequence alignment