Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOY09_RS00965 Genome accession   NZ_CP046590
Coordinates   183656..184717 (-) Length   353 a.a.
NCBI ID   WP_086042409.1    Uniprot ID   -
Organism   Macrococcoides canis strain LI021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178656..189717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY09_RS00950 (GOY09_00950) - 179037..180770 (-) 1734 WP_210152954.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  GOY09_RS00955 (GOY09_00955) - 180875..181669 (-) 795 WP_211553302.1 TIGR00282 family metallophosphoesterase -
  GOY09_RS00960 (GOY09_00960) rny 181811..183370 (-) 1560 WP_211553309.1 ribonuclease Y -
  GOY09_RS00965 (GOY09_00965) recA 183656..184717 (-) 1062 WP_086042409.1 recombinase RecA Machinery gene
  GOY09_RS00970 (GOY09_00970) pgsA 184997..185578 (-) 582 WP_133419324.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GOY09_RS00975 (GOY09_00975) - 185595..186416 (-) 822 WP_164942064.1 helix-turn-helix domain-containing protein -
  GOY09_RS00980 (GOY09_00980) - 186432..187223 (-) 792 WP_164942063.1 YmfK family protein -
  GOY09_RS00985 (GOY09_00985) - 187234..187941 (-) 708 WP_211553311.1 SDR family NAD(P)-dependent oxidoreductase -
  GOY09_RS00990 (GOY09_00990) yfmH 187934..189202 (-) 1269 WP_211553313.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38441.57 Da        Isoelectric Point: 5.0167

>NTDB_id=405729 GOY09_RS00965 WP_086042409.1 183656..184717(-) (recA) [Macrococcoides canis strain LI021]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEVRDEIDQK
IRKAMGVGASLEEPSVQKEEVPVEDNLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=405729 GOY09_RS00965 WP_086042409.1 183656..184717(-) (recA) [Macrococcoides canis strain LI021]
ATGAGCGAAAGACAAAAAGCATTAGACACAGTTATTAAGAATATGGAGAAATCATTTGGGAAAGGTGCTGTTATGAAGCT
TGGAGATCGTACAGATCGCAATGTTTCAACAGTGTCAAGTGGTTCTATTACACTAGATAGTGCACTTGGCGTTGGCGGTT
ACCCGAAAGGTCGTATTATAGAAATTTATGGTCCGGAAAGTTCAGGTAAGACAACTGTTGCGCTTCATGCCATTGCAGAA
GTACAACGTCAAGGTGGTGTTGCTGCGTTTATTGATGCTGAGCATGCACTAGATCCAGTATACGCGAAGAATCTAGGAGT
AGATATCGAAAACCTATACTTATCTCAACCAGATCACGGTGAACAAGGACTAGAAATTGCAGAAGCGTTCGTTAGAAGTG
GTGCAGTGGATATAATTGTTGTCGATTCAGTTGCTGCATTAACACCTAAAGCAGAGATTGAAGGTGAGATGGGAGACTCG
CATATGGGTCTTCAGGCACGCCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTGTATCTAAGTCTAATACGATTGC
CATCTTTATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAGACGACTCCAGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTCAGGATATTGTAGGGAACAGAACA
AAGATTAAGGTCGTTAAAAATAAAGTAGCACCACCATTTAAGGTGGCTGAAGTAGATATTATGTACGGTAAAGGTATTTC
TCGTGAAGGAGAAATCGTTGATCTAGGTGCAGAATATGAAGTGCTGCAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATCGGTCAAGGACGAGAAAATATTAAGACTTATCTGAAAGAGAATCCAGAAGTACGTGATGAAATCGACCAGAAG
ATTCGTAAGGCGATGGGCGTTGGTGCTTCATTAGAAGAACCGTCAGTTCAAAAGGAAGAAGTGCCAGTAGAAGATAATTT
ATTCGACGACGAGCTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.758

92.635

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.839

100

0.688
  recA Streptococcus mitis SK321

62.259

100

0.64
  recA Streptococcus pyogenes NZ131

68.293

92.918

0.635
  recA Streptococcus mutans UA159

67.477

93.201

0.629
  recA Streptococcus pneumoniae D39

65.758

93.484

0.615
  recA Streptococcus mitis NCTC 12261

65.758

93.484

0.615
  recA Streptococcus pneumoniae Rx1

65.758

93.484

0.615
  recA Streptococcus pneumoniae R6

65.758

93.484

0.615
  recA Streptococcus pneumoniae TIGR4

65.758

93.484

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.848

93.484

0.606
  recA Acinetobacter baumannii D1279779

62.832

96.034

0.603
  recA Acinetobacter baylyi ADP1

64.832

92.635

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.068

0.592
  recA Neisseria gonorrhoeae strain FA1090

62.952

94.051

0.592
  recA Neisseria gonorrhoeae MS11

62.952

94.051

0.592
  recA Neisseria gonorrhoeae MS11

62.952

94.051

0.592
  recA Vibrio cholerae strain A1552

64.286

91.218

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.286

91.218

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.495

88.669

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

93.484

0.581
  recA Pseudomonas stutzeri DSM 10701

58.739

98.867

0.581
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.635

0.567
  recA Glaesserella parasuis strain SC1401

61.61

91.501

0.564

Multiple sequence alignment