Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GNH96_RS01500 Genome accession   NZ_CP046565
Coordinates   319908..320951 (-) Length   347 a.a.
NCBI ID   WP_169601631.1    Uniprot ID   A0A858Q4V5
Organism   Methylococcus geothermalis strain IM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 314908..325951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNH96_RS01480 (GNH96_01475) csrA 315210..315404 (-) 195 WP_010959751.1 carbon storage regulator CsrA -
  GNH96_RS01485 (GNH96_01480) - 315554..316783 (-) 1230 WP_169601626.1 aspartate kinase -
  GNH96_RS01490 (GNH96_01485) alaS 316818..319421 (-) 2604 WP_169601629.1 alanine--tRNA ligase -
  GNH96_RS01495 (GNH96_01490) - 319441..319911 (-) 471 WP_323848043.1 regulatory protein RecX -
  GNH96_RS01500 (GNH96_01495) recA 319908..320951 (-) 1044 WP_169601631.1 recombinase RecA Machinery gene
  GNH96_RS01505 (GNH96_01500) thpR 320984..321559 (-) 576 WP_169601633.1 RNA 2',3'-cyclic phosphodiesterase -
  GNH96_RS01510 (GNH96_01505) - 321537..322019 (-) 483 WP_169604543.1 CinA family protein -
  GNH96_RS01515 (GNH96_01510) - 322315..323127 (-) 813 WP_169601635.1 alpha/beta fold hydrolase -
  GNH96_RS01520 (GNH96_01515) - 323120..324211 (-) 1092 WP_169601637.1 M14 family zinc carboxypeptidase -
  GNH96_RS01525 (GNH96_01520) - 324389..325528 (+) 1140 WP_228719956.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37084.33 Da        Isoelectric Point: 5.5009

>NTDB_id=405572 GNH96_RS01500 WP_169601631.1 319908..320951(-) (recA) [Methylococcus geothermalis strain IM1]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVVSTGSLALDIALGCGGLPRGRIIEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSHGGDRIGQGKDNVRIYLKEHPEVAAAIE
AAIREKALAGLKHAAPPERAAAEESEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=405572 GNH96_RS01500 WP_169601631.1 319908..320951(-) (recA) [Methylococcus geothermalis strain IM1]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTCTCCCAGATCGAGAAACAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGATGTCGCGGCGGTCCGGGACATCGATGTGGTGTCCACCGGCTCGCTGGCGCTGGACATCGCGCTGGGCTGCG
GCGGTTTGCCGCGCGGCCGCATCATCGAGATTTACGGCCCTGAATCCTCGGGCAAGACCACGCTGACCCTGGAGGTCATC
GCCCAGGCGCAAAAGACCGGCGGCGTGGCGGCCTTCGTGGACGCCGAGCATGCCCTGGACCCGGTCTACGCCGAAAAGAT
CGGGGTGAACCTCGACGATCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGC
GTTCCGGCGGCGTGGACGTGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCCCACATGGGCCTGCAGGCCCGGCTGATGTCGCAGGCGTTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAATAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAGACCACCACCGGAGGCAACG
CGCTCAAGTTCTACGCCTCCGTGCGGCTGGACATCCGCCGTTCCGGCGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAGACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCGTTCCGCACCGCCGATTTCGAGATTCTGTACGGCGAGGG
TATCTCGCGCGAGGGCGAGCTGATCGATCTCGGCGTGAACCACGACATCGTGCAGAAATCCGGTTCGTGGTACAGCCATG
GTGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCCGAGGTCGCCGCCGCCATCGAG
GCTGCCATTCGGGAAAAGGCGCTGGCGGGGCTCAAGCATGCGGCGCCTCCGGAGCGCGCCGCGGCGGAAGAGAGTGAGTT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858Q4V5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

71.676

99.712

0.715
  recA Pseudomonas stutzeri DSM 10701

75

94.524

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.085

94.524

0.7
  recA Vibrio cholerae strain A1552

74.085

94.524

0.7
  recA Acinetobacter baumannii D1279779

73.556

94.813

0.697
  recA Neisseria gonorrhoeae MS11

72.59

95.677

0.695
  recA Neisseria gonorrhoeae MS11

72.59

95.677

0.695
  recA Neisseria gonorrhoeae strain FA1090

72.59

95.677

0.695
  recA Ralstonia pseudosolanacearum GMI1000

75.484

89.337

0.674
  recA Glaesserella parasuis strain SC1401

72.05

92.795

0.669
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

95.965

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

92.795

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

93.66

0.62
  recA Helicobacter pylori strain NCTC11637

63.804

93.948

0.599
  recA Helicobacter pylori 26695

63.497

93.948

0.597
  recA Streptococcus pneumoniae TIGR4

62.577

93.948

0.588
  recA Streptococcus pneumoniae D39

62.577

93.948

0.588
  recA Streptococcus pneumoniae R6

62.577

93.948

0.588
  recA Streptococcus pneumoniae Rx1

62.577

93.948

0.588
  recA Streptococcus pyogenes NZ131

62.195

94.524

0.588
  recA Streptococcus mitis SK321

62.654

93.372

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

92.795

0.585
  recA Streptococcus mitis NCTC 12261

62.037

93.372

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.423

95.389

0.576
  recA Streptococcus mutans UA159

61.043

93.948

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.185

93.372

0.562

Multiple sequence alignment