Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GM698_RS02065 Genome accession   NZ_CP046532
Coordinates   452296..453399 (-) Length   367 a.a.
NCBI ID   WP_159629272.1    Uniprot ID   -
Organism   Mannheimia sp. ZY171111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 447296..458399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM698_RS02010 (GM698_02000) - 447425..448093 (-) 669 WP_245189278.1 CDP-alcohol phosphatidyltransferase family protein -
  GM698_RS02015 (GM698_02005) purN 448233..448871 (-) 639 WP_176809720.1 phosphoribosylglycinamide formyltransferase -
  GM698_RS02040 (GM698_02030) aroE 449523..450347 (-) 825 WP_209289583.1 shikimate dehydrogenase -
  GM698_RS02045 (GM698_02035) - 450354..450908 (-) 555 WP_209289584.1 Sua5/YciO/YrdC/YwlC family protein -
  GM698_RS02050 (GM698_02040) - 450909..451445 (-) 537 WP_209289585.1 type I DNA topoisomerase -
  GM698_RS02055 (GM698_02045) yqfB 451455..451766 (-) 312 WP_209289586.1 N(4)-acetylcytidine aminohydrolase -
  GM698_RS02060 (GM698_02050) recX 451759..452238 (-) 480 WP_176809716.1 recombination regulator RecX -
  GM698_RS02065 (GM698_02055) recA 452296..453399 (-) 1104 WP_159629272.1 recombinase RecA Machinery gene
  GM698_RS02070 (GM698_02060) - 453486..454106 (-) 621 WP_176808037.1 aminotransferase class IV family protein -
  GM698_RS02075 (GM698_02065) - 454084..455058 (-) 975 WP_159629270.1 aminodeoxychorismate synthase component I -
  GM698_RS02080 (GM698_02070) rmuC 455143..456762 (+) 1620 WP_245189279.1 DNA recombination protein RmuC -
  GM698_RS02085 (GM698_02075) - 456823..457407 (+) 585 WP_176808035.1 anthranilate synthase component II -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39600.18 Da        Isoelectric Point: 4.8543

>NTDB_id=405173 GM698_RS02065 WP_159629272.1 452296..453399(-) (recA) [Mannheimia sp. ZY171111]
MAEKKSQKSTPVKQVEPEQKEKALAAALAQIEKQFGKGSIMKLGDTQTLDIEAVSTGSLGLDSALGIGGLPMGRIVEIYG
PESSGKTTLTLSVVAQAQKNGKTCAFIDAEHALDPVYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR
RSGAVKDGDEVIGSETKVKVVKNKVAPPFREVHFDIMYGEGIARTNELLILAEANGFIKKAGAWFSYEGEKIGQGKNNAI
KWLKEHPEIAEKIEKDVRDLLIANPNLVSTQESENSDDSEEFNEEEL

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=405173 GM698_RS02065 WP_159629272.1 452296..453399(-) (recA) [Mannheimia sp. ZY171111]
ATGGCAGAGAAGAAAAGTCAAAAAAGTACACCTGTAAAACAGGTTGAACCAGAACAAAAAGAAAAGGCACTTGCTGCTGC
ATTAGCTCAAATTGAGAAACAGTTCGGCAAAGGCTCAATTATGAAGCTAGGTGATACTCAAACATTAGATATTGAGGCTG
TTTCAACAGGTTCTTTAGGTTTAGACTCCGCATTAGGTATCGGTGGTTTGCCAATGGGGCGTATTGTTGAGATTTACGGT
CCAGAATCTTCAGGTAAAACAACTTTGACTTTATCTGTTGTGGCTCAAGCACAGAAAAATGGTAAAACTTGTGCTTTTAT
TGATGCGGAACACGCACTTGATCCTGTTTATGCTCGTAAATTAGGAGTAGATACAGATGGGTTATTAATTTCACAACCAG
ATAACGGTGAGCAAGCATTAGAAATCTGTGATGCATTAGTTAGGTCTGGTGCGGTGGATGTAATTATTGTCGATTCTGTT
GCAGCCCTTACGCCTAAAGCAGAAATTGAAGGTGATATGGGCGATTCACATATGGGATTGCAAGCACGTTTAATGTCACA
AGCATTACGTAAATTAACGGCAAATATTAAGGCTACAAATTGTTTAGTTATCTTTATTAACCAAATTCGTATGAAAATTG
GTGTGATGTTTGGTAACCCAGAAACCACAACAGGTGGTAACGCGTTAAAATTCTATGCTTCTGTACGTTTAGATATTCGC
CGCTCTGGTGCAGTAAAAGATGGCGATGAAGTTATTGGTAGTGAAACCAAAGTGAAAGTAGTGAAAAACAAAGTTGCACC
ACCATTCCGTGAGGTTCATTTTGATATTATGTATGGTGAAGGGATTGCACGAACCAATGAATTATTGATTCTTGCAGAAG
CAAATGGCTTTATCAAAAAAGCTGGCGCTTGGTTCTCTTATGAGGGCGAGAAAATTGGTCAGGGTAAAAACAATGCAATC
AAATGGTTGAAAGAACACCCTGAAATAGCAGAAAAAATAGAAAAAGATGTTAGAGATTTATTGATTGCTAATCCAAATTT
GGTTTCTACTCAAGAATCTGAAAACTCAGATGATAGTGAAGAATTTAACGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

84.409

100

0.856
  recA Pseudomonas stutzeri DSM 10701

71.221

93.733

0.668
  recA Vibrio cholerae strain A1552

70.725

94.005

0.665
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.725

94.005

0.665
  recA Acinetobacter baylyi ADP1

70.64

93.733

0.662
  recA Acinetobacter baumannii D1279779

73.538

88.556

0.651
  recA Neisseria gonorrhoeae MS11

71.605

88.283

0.632
  recA Neisseria gonorrhoeae MS11

71.605

88.283

0.632
  recA Neisseria gonorrhoeae strain FA1090

71.605

88.283

0.632
  recA Ralstonia pseudosolanacearum GMI1000

70.122

89.373

0.627
  recA Streptococcus pneumoniae R6

60.108

100

0.608
  recA Streptococcus pneumoniae Rx1

60.108

100

0.608
  recA Streptococcus pneumoniae D39

60.108

100

0.608
  recA Streptococcus pneumoniae TIGR4

60.108

100

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

90.463

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.83

89.646

0.572
  recA Streptococcus mitis NCTC 12261

61.947

92.371

0.572
  recA Streptococcus mitis SK321

61.652

92.371

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.777

88.011

0.561
  recA Streptococcus mutans UA159

60.472

92.371

0.559
  recA Streptococcus pyogenes NZ131

60.177

92.371

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

63.438

87.193

0.553
  recA Helicobacter pylori strain NCTC11637

60.843

90.463

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.772

93.188

0.548
  recA Helicobacter pylori 26695

60.241

90.463

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

87.466

0.523

Multiple sequence alignment