Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GNX71_RS32910 Genome accession   NZ_CP046508
Coordinates   7055226..7056335 (-) Length   369 a.a.
NCBI ID   WP_206176264.1    Uniprot ID   -
Organism   Variovorax sp. RKNM96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7050226..7061335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX71_RS32880 (GNX71_32805) sucC 7050694..7051860 (-) 1167 WP_206176258.1 ADP-forming succinate--CoA ligase subunit beta -
  GNX71_RS32885 (GNX71_32810) argC 7052068..7052991 (+) 924 WP_206176259.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  GNX71_RS32890 (GNX71_32815) - 7053013..7053741 (-) 729 WP_206176260.1 hypothetical protein -
  GNX71_RS32895 (GNX71_32820) yiaA 7053856..7054296 (+) 441 WP_206176261.1 inner membrane protein YiaA -
  GNX71_RS32900 (GNX71_32825) - 7054307..7054738 (-) 432 WP_206176262.1 SRPBCC family protein -
  GNX71_RS32905 (GNX71_32830) recX 7054719..7055180 (-) 462 WP_206176263.1 recombination regulator RecX -
  GNX71_RS32910 (GNX71_32835) recA 7055226..7056335 (-) 1110 WP_206176264.1 recombinase RecA Machinery gene
  GNX71_RS32915 (GNX71_32840) - 7056483..7056968 (+) 486 WP_206176265.1 MarR family winged helix-turn-helix transcriptional regulator -
  GNX71_RS32920 (GNX71_32845) - 7057031..7057702 (+) 672 WP_176661219.1 response regulator transcription factor -
  GNX71_RS32925 (GNX71_32850) - 7057761..7059203 (+) 1443 WP_206176266.1 sensor histidine kinase -
  GNX71_RS32930 (GNX71_32855) - 7059222..7059419 (-) 198 WP_206176267.1 sporulation protein -
  GNX71_RS32935 (GNX71_32860) - 7059434..7060246 (-) 813 WP_206176268.1 biotin--[acetyl-CoA-carboxylase] ligase -
  GNX71_RS32940 (GNX71_32865) - 7060249..7060875 (-) 627 WP_206176269.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39239.08 Da        Isoelectric Point: 5.2231

>NTDB_id=404783 GNX71_RS32910 WP_206176264.1 7055226..7056335(-) (recA) [Variovorax sp. RKNM96]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVVAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADAGSEPEKAEKPAKAPKADKAAE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=404783 GNX71_RS32910 WP_206176264.1 7055226..7056335(-) (recA) [Variovorax sp. RKNM96]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTCCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAAGGCGAGGCGCTCGAAGACATCCAGGTGGTCTCCA
CCGGTTCGCTGGGGCTGGACATCGCACTGGGCGTCGGCGGCCTGCCGCGCGGCCGGGTGATCGAGATCTACGGCCCTGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCGTCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCATGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCGGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAGGTCATCGACATGGGCGTCACGGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCCGCCGA
TGCCGGATCGGAACCCGAGAAGGCCGAGAAGCCTGCCAAGGCGCCCAAGGCCGACAAGGCGGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.818

92.412

0.756
  recA Neisseria gonorrhoeae MS11

68.696

93.496

0.642
  recA Neisseria gonorrhoeae MS11

68.696

93.496

0.642
  recA Neisseria gonorrhoeae strain FA1090

68.696

93.496

0.642
  recA Pseudomonas stutzeri DSM 10701

71.779

88.347

0.634
  recA Acinetobacter baylyi ADP1

71.472

88.347

0.631
  recA Acinetobacter baumannii D1279779

70.859

88.347

0.626
  recA Glaesserella parasuis strain SC1401

70.988

87.805

0.623
  recA Vibrio cholerae strain A1552

69.605

89.16

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

89.16

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.507

93.496

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.559

89.702

0.588
  recA Helicobacter pylori strain NCTC11637

64.634

88.889

0.575
  recA Helicobacter pylori 26695

64.634

88.889

0.575
  recA Streptococcus mutans UA159

59.437

96.206

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  recA Streptococcus mitis SK321

59.538

93.767

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.431

0.558
  recA Lactococcus lactis subsp. cremoris KW2

61.934

89.702

0.556
  recA Streptococcus pyogenes NZ131

62.006

89.16

0.553
  recA Streptococcus pneumoniae Rx1

61.329

89.702

0.55
  recA Streptococcus pneumoniae R6

61.329

89.702

0.55
  recA Streptococcus pneumoniae TIGR4

61.329

89.702

0.55
  recA Streptococcus pneumoniae D39

61.329

89.702

0.55
  recA Streptococcus mitis NCTC 12261

61.027

89.702

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.992

0.534

Multiple sequence alignment