Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GNG26_RS17460 Genome accession   NZ_CP046446
Coordinates   3683866..3684924 (-) Length   352 a.a.
NCBI ID   WP_103180881.1    Uniprot ID   -
Organism   Leclercia sp. J807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3678866..3689924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG26_RS17445 (GNG26_17445) csrA 3680112..3680297 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  GNG26_RS17450 (GNG26_17450) alaS 3680539..3683166 (-) 2628 WP_103822665.1 alanine--tRNA ligase -
  GNG26_RS17455 (GNG26_17455) recX 3683298..3683798 (-) 501 WP_156239662.1 recombination regulator RecX -
  GNG26_RS17460 (GNG26_17460) recA 3683866..3684924 (-) 1059 WP_103180881.1 recombinase RecA Machinery gene
  GNG26_RS17465 (GNG26_17465) pncC 3685012..3685509 (-) 498 WP_114316935.1 nicotinamide-nucleotide amidase -
  GNG26_RS17470 (GNG26_17470) mltB 3685671..3686762 (-) 1092 WP_114316934.1 lytic murein transglycosylase B -
  GNG26_RS22750 - 3686820..3686945 (-) 126 WP_255410161.1 hypothetical protein -
  GNG26_RS17475 (GNG26_17475) srlA 3687030..3687593 (+) 564 WP_103822669.1 PTS glucitol/sorbitol transporter subunit IIC -
  GNG26_RS17480 (GNG26_17480) - 3687590..3688549 (+) 960 WP_103822670.1 PTS glucitol/sorbitol transporter subunit IIB -
  GNG26_RS17485 (GNG26_17485) srlB 3688562..3688924 (+) 363 WP_103822671.1 PTS glucitol/sorbitol transporter subunit IIA -
  GNG26_RS17490 (GNG26_17490) srlD 3688939..3689718 (+) 780 WP_103180887.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37884.24 Da        Isoelectric Point: 4.7460

>NTDB_id=404347 GNG26_RS17460 WP_103180881.1 3683866..3684924(-) (recA) [Leclercia sp. J807]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRDLLLNNQDAKPDFTADDADVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=404347 GNG26_RS17460 WP_103180881.1 3683866..3684924(-) (recA) [Leclercia sp. J807]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGATCGTTCCATGGATGTAGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATTGCACTGGGTG
CTGGCGGCCTGCCTATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACCTTACAGGTT
GTGGCTGCTGCACAGCGCGAGGGCAAAACCTGTGCCTTTATCGATGCTGAGCACGCGCTGGATCCGGTTTACGCACGTAA
ACTGGGTGTCGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCACTGG
CGCGCTCTGGCGCAGTTGACGTAATCATCGTCGACTCCGTAGCGGCGCTGACGCCAAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCCGTGCGTCTGGATATCCGCCGTATCGGTGCCGTTAAAGACGGTGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAGATTGCTGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAGATCGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCAGCGAAAGAGATT
GAGAAGAAGGTACGCGATCTGCTTCTCAACAATCAGGATGCTAAGCCTGACTTCACTGCGGATGACGCAGACGTAGAAGA
AACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.226

100

0.807
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.226

100

0.807
  recA Pseudomonas stutzeri DSM 10701

72.727

96.875

0.705
  recA Acinetobacter baylyi ADP1

70.487

99.148

0.699
  recA Glaesserella parasuis strain SC1401

69.516

99.716

0.693
  recA Acinetobacter baumannii D1279779

73.7

92.898

0.685
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.352

0.622
  recA Streptococcus mitis SK321

59.259

99.716

0.591
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.231

92.33

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.761

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.459

94.602

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

92.614

0.56

Multiple sequence alignment