Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GM418_RS22710 Genome accession   NZ_CP046401
Coordinates   5616343..5617368 (+) Length   341 a.a.
NCBI ID   WP_158869499.1    Uniprot ID   A0A6I6K482
Organism   Maribellus comscasis strain WC007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5611343..5622368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM418_RS22685 (GM418_22655) floA 5612583..5613560 (-) 978 WP_158869495.1 flotillin-like protein FloA -
  GM418_RS22690 (GM418_22660) - 5613562..5614035 (-) 474 WP_158869496.1 NfeD family protein -
  GM418_RS22695 (GM418_22665) - 5614045..5614323 (-) 279 WP_158869497.1 ATP-dependent Clp protease adaptor ClpS -
  GM418_RS22700 (GM418_22670) - 5614320..5615702 (-) 1383 WP_158869498.1 hypothetical protein -
  GM418_RS22705 (GM418_22675) bcp 5615866..5616330 (+) 465 Protein_4500 thioredoxin-dependent thiol peroxidase -
  GM418_RS22710 (GM418_22680) recA 5616343..5617368 (+) 1026 WP_158869499.1 recombinase RecA Machinery gene
  GM418_RS22715 (GM418_22685) thrA 5617455..5619878 (+) 2424 WP_158869500.1 bifunctional aspartate kinase/homoserine dehydrogenase I -
  GM418_RS22720 (GM418_22690) - 5619914..5621122 (+) 1209 WP_158869501.1 cofactor-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37060.66 Da        Isoelectric Point: 5.9918

>NTDB_id=403951 GM418_RS22710 WP_158869499.1 5616343..5617368(+) (recA) [Maribellus comscasis strain WC007]
MTKEEKNQMNKEKLKAIQLTMDKIEKSYGKGSIMRMGDRAVEDVPAIPSGSIALDVALGIGGYPKGRVIEIYGPESSGKT
TLAIHAIAEAQKAGGIAAIIDAEHAFDPYYAKKLGVDIDELLISQPDSGEQALEIADNLIRSGALDIVVIDSVAALTPKA
ELEGEMGDSKMGLQARLMSQALRKLTANINKTKTCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKD
GDEVQGNNVRVKVVKNKVAPPFRKAEFDILYGEGISKSGEIIDLGVQFNIIKKSGSWFSYGETKLGQGRETVRNLILDNP
ELAQELETKIMETITGKITSE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=403951 GM418_RS22710 WP_158869499.1 5616343..5617368(+) (recA) [Maribellus comscasis strain WC007]
ATGACAAAAGAAGAAAAAAACCAAATGAATAAAGAAAAGCTGAAAGCAATTCAGCTTACAATGGATAAAATTGAAAAAAG
CTATGGTAAAGGTTCCATCATGCGTATGGGCGATCGCGCAGTTGAAGATGTTCCTGCCATTCCATCGGGGTCCATTGCTT
TGGATGTTGCCCTTGGAATTGGAGGTTACCCCAAAGGAAGGGTAATCGAAATTTACGGACCGGAATCTTCGGGCAAAACA
ACCCTGGCCATTCATGCTATTGCTGAAGCGCAAAAAGCAGGGGGAATTGCCGCTATTATTGATGCCGAACACGCCTTTGA
CCCGTATTATGCAAAGAAACTGGGAGTTGATATTGATGAATTATTGATTTCACAACCCGATAGCGGAGAGCAGGCCCTGG
AAATTGCCGATAATCTTATTCGTTCAGGAGCTTTGGATATTGTAGTGATCGACTCGGTTGCAGCACTTACTCCAAAAGCT
GAACTGGAGGGAGAAATGGGCGATTCAAAAATGGGATTACAGGCTCGTTTAATGTCGCAGGCTCTGCGTAAGCTTACTGC
AAACATCAATAAAACCAAAACCTGCTGCATTTTTATCAATCAGTTGAGGGAAAAAATAGGAGTGATGTTTGGTAACCCTG
AAACCACAACCGGAGGAAATGCACTTAAGTTTTATGCTTCGGTTCGTTTGGATATTCGCCGGATTGGACAGATAAAAGAT
GGTGATGAGGTTCAGGGAAATAATGTTCGTGTGAAAGTGGTGAAGAACAAAGTTGCTCCGCCATTCCGTAAAGCAGAATT
TGATATTTTGTATGGTGAAGGAATTTCAAAATCAGGTGAAATTATCGATTTAGGAGTCCAGTTTAACATCATTAAAAAAA
GCGGTTCGTGGTTTAGTTATGGTGAAACTAAATTGGGACAGGGAAGAGAAACCGTGCGTAATCTGATTCTTGATAATCCG
GAGTTGGCACAGGAACTCGAAACAAAAATAATGGAGACGATTACGGGAAAAATTACAAGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6K482

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.805

100

0.692
  recA Ralstonia pseudosolanacearum GMI1000

66.564

95.601

0.636
  recA Acinetobacter baylyi ADP1

63.664

97.654

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

66.246

92.962

0.616
  recA Neisseria gonorrhoeae strain FA1090

65.015

94.721

0.616
  recA Neisseria gonorrhoeae MS11

65.015

94.721

0.616
  recA Neisseria gonorrhoeae MS11

65.015

94.721

0.616
  recA Acinetobacter baumannii D1279779

64.11

95.601

0.613
  recA Glaesserella parasuis strain SC1401

62.727

96.774

0.607
  recA Streptococcus mitis SK321

63.777

94.721

0.604
  recA Streptococcus mitis NCTC 12261

63.777

94.721

0.604
  recA Helicobacter pylori strain NCTC11637

62.691

95.894

0.601
  recA Streptococcus pneumoniae D39

63.467

94.721

0.601
  recA Streptococcus pneumoniae R6

63.467

94.721

0.601
  recA Streptococcus pneumoniae TIGR4

63.467

94.721

0.601
  recA Streptococcus pneumoniae Rx1

63.467

94.721

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.577

95.601

0.598
  recA Vibrio cholerae strain A1552

62.577

95.601

0.598
  recA Pseudomonas stutzeri DSM 10701

63.354

94.428

0.598
  recA Streptococcus pyogenes NZ131

62.385

95.894

0.598
  recA Helicobacter pylori 26695

62.385

95.894

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.468

95.894

0.589
  recA Streptococcus mutans UA159

60.36

97.654

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.009

93.548

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.61

94.721

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

95.308

0.575

Multiple sequence alignment