Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GK020_RS08795 Genome accession   NZ_CP046392
Coordinates   1808094..1809137 (+) Length   347 a.a.
NCBI ID   WP_005178495.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803094..1814137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS08760 rraA 1803273..1803785 (-) 513 WP_045795414.1 ribonuclease E activity regulator RraA -
  GK020_RS08765 - 1803797..1804462 (-) 666 WP_156189069.1 NAD(P)H-binding protein -
  GK020_RS08770 rpsT 1804675..1804944 (+) 270 WP_005178484.1 30S ribosomal protein S20 -
  GK020_RS08775 - 1805169..1805903 (-) 735 WP_005178488.1 histidine phosphatase family protein -
  GK020_RS08780 - 1805959..1806816 (-) 858 WP_104988530.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GK020_RS08785 - 1806829..1807515 (+) 687 WP_104988529.1 HAD-IA family hydrolase -
  GK020_RS08790 - 1807508..1807948 (+) 441 WP_005178493.1 RNA-binding S4 domain-containing protein -
  GK020_RS08795 recA 1808094..1809137 (+) 1044 WP_005178495.1 recombinase RecA Machinery gene
  GK020_RS08800 - 1809227..1809832 (+) 606 WP_087662267.1 regulatory protein RecX -
  GK020_RS08810 - 1810359..1811213 (+) 855 WP_045795420.1 YbgF trimerization domain-containing protein -
  GK020_RS08815 rodA 1811260..1812396 (-) 1137 WP_087662268.1 rod shape-determining protein RodA -
  GK020_RS08820 ispD 1812503..1813240 (-) 738 WP_005178503.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GK020_RS08825 - 1813200..1813601 (-) 402 WP_075167982.1 septum formation initiator family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37750.17 Da        Isoelectric Point: 4.9580

>NTDB_id=403804 GK020_RS08795 WP_005178495.1 1808094..1809137(+) (recA) [Acinetobacter indicus strain WMB-7]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGEKIGQGKNNTIRHLEEHPELAQTIEK
LIREQLLTTGNVVEEKDEEEPDFSLDL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=403804 GK020_RS08795 WP_005178495.1 1808094..1809137(+) (recA) [Acinetobacter indicus strain WMB-7]
ATGGATGAGAATAAAAGCAAGGCGCTAAATGCTGCCCTAAGCCAGATTGAAAAACAGTTTGGTAAAAACACAGTAATGCG
TCTTGGTGACAATACCGTACAGGCTGTAGAAGCAGTATCTACCGGTTCATTAACGCTGGATATCGCGCTCGGTATTGGCG
GTTTACCCAAAGGCCGTATTATTGAAATTTATGGCCCTGAATCTTCAGGTAAAACCACAATGACCCTGCAAGCCATTGCG
GAATGTCAAAAAGCCGGCGGCACCTGTGCCTTTATTGATGCCGAACATGCTCTTGATCCTCAATATGCGCGCAAACTGGG
TGTAGATATTGACAACCTGCTGGTTTCACAACCGGACAACGGTGAACAGGCACTGGAAATTGCCGACATGCTGGTACGTT
CAGGCGCAATTGACCTGATCGTTGTCGACTCTGTTGCAGCCCTGACCCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
TCACATATGGGCTTGCAGGCTCGTCTGATGAGCCAGGCGCTACGTAAAATTACCGGTAATGCCAAACGTTCTAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGTGTCATGTTCGGTAGCCCGGAAACCACCACTGGTGGTAACGCAC
TGAAATTCTATGCCTCAGTACGTTTAGATATTCGCCGTGTTGGTCAGGTTAAAGAAGGTGACGAGATTGTCGGTTCTGAA
ACCAAAGTAAAAGTGGTGAAAAACAAGATGGCACCTCCGTTCCGTGAAGCGCTGTTCCAGATTCTGTACGGCAAAGGTGT
AAACCATTTAGGTGAACTGGTCGACCTAGCTGTACAGCAAGAGATTGTACAAAAAGCCGGCGCCTGGTATTCATATCAAG
GTGAAAAGATTGGTCAGGGTAAAAACAATACCATTCGCCATCTGGAAGAACATCCTGAACTGGCACAGACCATTGAAAAA
CTGATTCGTGAACAGCTATTAACCACAGGCAATGTGGTGGAAGAAAAAGACGAAGAAGAACCTGACTTTTCATTAGATCT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.805

100

0.911
  recA Acinetobacter baylyi ADP1

89.884

99.712

0.896
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

72.892

95.677

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.892

95.677

0.697
  recA Glaesserella parasuis strain SC1401

70.695

95.389

0.674
  recA Ralstonia pseudosolanacearum GMI1000

72.611

90.49

0.657
  recA Neisseria gonorrhoeae MS11

64.265

100

0.643
  recA Neisseria gonorrhoeae MS11

64.265

100

0.643
  recA Neisseria gonorrhoeae strain FA1090

64.265

100

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

97.983

0.62
  recA Helicobacter pylori strain NCTC11637

62.537

97.695

0.611
  recA Helicobacter pylori 26695

62.242

97.695

0.608
  recA Streptococcus pneumoniae TIGR4

61.765

97.983

0.605
  recA Streptococcus pneumoniae Rx1

61.765

97.983

0.605
  recA Streptococcus pneumoniae D39

61.765

97.983

0.605
  recA Streptococcus pneumoniae R6

61.765

97.983

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.389

0.602
  recA Streptococcus mutans UA159

59.942

100

0.599
  recA Streptococcus pyogenes NZ131

58.475

100

0.597
  recA Streptococcus mitis SK321

60.117

98.271

0.591
  recA Streptococcus mitis NCTC 12261

60.117

98.271

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.354

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.795

0.579
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

Multiple sequence alignment