Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SAR11G3_RS04240 Genome accession   NC_015380
Coordinates   803939..805069 (+) Length   376 a.a.
NCBI ID   WP_013695545.1    Uniprot ID   F2I0U5
Organism   Candidatus Pelagibacter sp. IMCC9063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 798939..810069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAR11G3_RS04215 (SAR11G3_00900) - 799410..800729 (-) 1320 WP_013695540.1 glycosyltransferase family 39 protein -
  SAR11G3_RS04220 (SAR11G3_00901) dksA 800801..801217 (+) 417 WP_013695541.1 RNA polymerase-binding protein DksA -
  SAR11G3_RS04225 (SAR11G3_00902) - 801214..801834 (-) 621 WP_013695542.1 glutathione S-transferase family protein -
  SAR11G3_RS04230 (SAR11G3_00903) - 801884..802486 (+) 603 WP_013695543.1 2-hydroxychromene-2-carboxylate isomerase -
  SAR11G3_RS04235 (SAR11G3_00904) - 802488..803828 (+) 1341 WP_013695544.1 TolC family protein -
  SAR11G3_RS04240 (SAR11G3_00905) recA 803939..805069 (+) 1131 WP_013695545.1 recombinase RecA Machinery gene
  SAR11G3_RS04245 (SAR11G3_00906) alaS 805172..807874 (+) 2703 WP_013695546.1 alanine--tRNA ligase -
  SAR11G3_RS04250 (SAR11G3_00907) - 807871..808857 (-) 987 WP_013695547.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40500.43 Da        Isoelectric Point: 7.3569

>NTDB_id=40294 SAR11G3_RS04240 WP_013695545.1 803939..805069(+) (recA) [Candidatus Pelagibacter sp. IMCC9063]
MAKKEGNLKVVNEAHTDDKERQKSLDAAISQIDSNFGKGSVMKLGQRQVMDIESISTGSLSLDIALGIGGLPKSRIVEIY
GPESSGKTTLALQVIAEAQKSGGTCAFIDAEHALDPSYAKKLGVNTTDLLISQPDTGEQALEITDTLVRSGAISVLVVDS
VAALTPRAELEGEMGDHHMGLQARLMSQALRKLTGSISKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRLDI
RRIGAIKDGDEIVGNQTRVKVVKNKVAPPFKVVEFDIMYGKGISKLGELIDLGAKADIVEKAGAWYSYKGEKIGQGKENS
KEYLINNPKISAEIEMAIRANAGLISDKMMGNPSPKEKIETEENSKNTKDTKELDK

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=40294 SAR11G3_RS04240 WP_013695545.1 803939..805069(+) (recA) [Candidatus Pelagibacter sp. IMCC9063]
ATGGCAAAAAAAGAAGGTAACTTAAAGGTAGTAAATGAGGCTCACACTGATGACAAAGAAAGACAAAAATCTTTAGATGC
AGCAATTAGTCAAATAGATTCAAACTTTGGAAAAGGCTCTGTAATGAAGCTTGGCCAAAGACAAGTAATGGATATTGAGT
CAATTTCAACAGGTTCGTTGAGTCTAGATATAGCTTTAGGGATAGGTGGATTGCCAAAGAGTAGAATTGTTGAAATTTAT
GGACCAGAATCCTCAGGAAAAACAACTTTAGCTTTACAAGTTATTGCAGAAGCGCAGAAAAGTGGTGGAACATGTGCGTT
TATCGATGCTGAACATGCTTTAGACCCAAGTTATGCAAAAAAACTAGGTGTAAACACTACAGATTTATTAATCTCTCAAC
CAGATACTGGAGAGCAGGCTTTAGAAATAACAGACACATTAGTTAGATCTGGTGCAATTTCAGTATTAGTAGTTGATTCT
GTTGCTGCTCTAACTCCTAGAGCTGAGCTTGAAGGAGAAATGGGCGATCATCACATGGGACTACAAGCTCGTTTAATGAG
TCAGGCCTTGAGAAAATTAACGGGAAGTATTTCAAAATCTAATACAATGGTTATCTTTATTAACCAAATAAGAATGAAAA
TTGGAGTAATGTTTGGAAGTCCAGAAACAACTGCTGGAGGAAATGCTTTAAAATTTTATTCATCCGTTAGATTGGATATC
AGAAGAATTGGTGCAATTAAAGACGGAGATGAAATTGTAGGAAATCAAACTAGAGTGAAGGTGGTAAAAAATAAAGTTGC
ACCTCCATTTAAGGTAGTTGAATTTGATATTATGTATGGAAAAGGTATAAGTAAATTGGGAGAGTTAATTGATCTTGGTG
CCAAAGCCGACATTGTTGAAAAAGCAGGAGCTTGGTATTCTTATAAAGGAGAAAAAATAGGTCAGGGTAAAGAAAACTCT
AAAGAGTATCTAATAAACAATCCTAAAATATCAGCAGAAATTGAAATGGCTATTAGAGCTAATGCCGGATTGATATCTGA
TAAAATGATGGGAAACCCTTCGCCAAAAGAAAAAATAGAAACTGAAGAGAATTCTAAAAATACAAAAGATACTAAGGAAT
TAGATAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2I0U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.94

89.362

0.625
  recA Acinetobacter baylyi ADP1

72.36

85.638

0.62
  recA Acinetobacter baumannii D1279779

72.36

85.638

0.62
  recA Glaesserella parasuis strain SC1401

63.889

95.745

0.612
  recA Neisseria gonorrhoeae MS11

69.394

87.766

0.609
  recA Neisseria gonorrhoeae MS11

69.394

87.766

0.609
  recA Neisseria gonorrhoeae strain FA1090

69.394

87.766

0.609
  recA Vibrio cholerae strain A1552

70.497

85.638

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.497

85.638

0.604
  recA Ralstonia pseudosolanacearum GMI1000

68.085

87.5

0.596
  recA Helicobacter pylori 26695

63.112

92.287

0.582
  recA Helicobacter pylori strain NCTC11637

63.112

92.287

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.159

87.234

0.577
  recA Streptococcus pneumoniae Rx1

57.219

99.468

0.569
  recA Streptococcus pneumoniae TIGR4

57.219

99.468

0.569
  recA Streptococcus pneumoniae R6

57.219

99.468

0.569
  recA Streptococcus pneumoniae D39

57.219

99.468

0.569
  recA Streptococcus mutans UA159

58.356

97.074

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.383

92.287

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.855

88.298

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

86.436

0.561
  recA Streptococcus mitis NCTC 12261

60.172

92.819

0.559
  recA Streptococcus mitis SK321

60.172

92.819

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

88.83

0.556
  recA Streptococcus pyogenes NZ131

60.976

87.234

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.831

88.298

0.511

Multiple sequence alignment