Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FOC31_RS07345 | Genome accession | NZ_CP046327 |
| Coordinates | 1601089..1602135 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain FDAARGOS_723 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1552326..1634067 | 1601089..1602135 | within | 0 |
Gene organization within MGE regions
Location: 1552326..1634067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC31_RS07110 (FOC31_07110) | - | 1554494..1555480 (-) | 987 | WP_009889153.1 | phage tail protein | - |
| FOC31_RS07115 (FOC31_07115) | - | 1555481..1556179 (-) | 699 | WP_009889149.1 | putative phage tail protein | - |
| FOC31_RS07120 (FOC31_07120) | - | 1556176..1557228 (-) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| FOC31_RS07125 (FOC31_07125) | - | 1557221..1557649 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| FOC31_RS07130 (FOC31_07130) | - | 1557649..1557975 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| FOC31_RS07135 (FOC31_07135) | - | 1557991..1559520 (-) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| FOC31_RS07140 (FOC31_07140) | - | 1559802..1560224 (-) | 423 | WP_009889143.1 | phage baseplate protein | - |
| FOC31_RS07145 (FOC31_07145) | - | 1560224..1562677 (-) | 2454 | WP_009889141.1 | hypothetical protein | - |
| FOC31_RS07150 (FOC31_07150) | - | 1562677..1562844 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| FOC31_RS07155 (FOC31_07155) | - | 1562871..1563317 (-) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| FOC31_RS07160 (FOC31_07160) | - | 1563431..1563859 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| FOC31_RS07165 (FOC31_07165) | - | 1563873..1564937 (-) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| FOC31_RS07170 (FOC31_07170) | - | 1564942..1565385 (-) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| FOC31_RS07175 (FOC31_07175) | - | 1565634..1566074 (-) | 441 | WP_009889133.1 | hypothetical protein | - |
| FOC31_RS07180 (FOC31_07180) | - | 1566179..1566376 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| FOC31_RS07185 (FOC31_07185) | - | 1566545..1566865 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| FOC31_RS07190 (FOC31_07190) | - | 1566947..1567453 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FOC31_RS07200 (FOC31_07200) | - | 1568154..1568909 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| FOC31_RS07205 (FOC31_07205) | - | 1569052..1569480 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| FOC31_RS07210 (FOC31_07210) | - | 1569901..1570101 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| FOC31_RS07215 (FOC31_07215) | - | 1570284..1571438 (-) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| FOC31_RS07220 (FOC31_07220) | - | 1571689..1572510 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| FOC31_RS07225 (FOC31_07225) | - | 1572586..1573974 (-) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| FOC31_RS07230 (FOC31_07230) | - | 1574118..1574876 (-) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| FOC31_RS07235 (FOC31_07235) | - | 1574878..1575594 (-) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| FOC31_RS07240 (FOC31_07240) | - | 1575596..1576303 (-) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| FOC31_RS07245 (FOC31_07245) | - | 1576420..1576956 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| FOC31_RS07250 (FOC31_07250) | - | 1577058..1578128 (-) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| FOC31_RS07255 (FOC31_07255) | - | 1578121..1579179 (-) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| FOC31_RS07260 (FOC31_07260) | - | 1579166..1579498 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| FOC31_RS07265 (FOC31_07265) | - | 1579697..1580818 (+) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| FOC31_RS07270 (FOC31_07270) | - | 1580946..1582844 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| FOC31_RS07275 (FOC31_07275) | - | 1583159..1583935 (+) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| FOC31_RS07280 (FOC31_07280) | - | 1584027..1584779 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| FOC31_RS07285 (FOC31_07285) | galT | 1584940..1585890 (-) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| FOC31_RS07290 (FOC31_07290) | - | 1586275..1587471 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| FOC31_RS07295 (FOC31_07295) | - | 1587583..1588929 (-) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| FOC31_RS07300 (FOC31_07300) | - | 1589062..1589814 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| FOC31_RS07305 (FOC31_07305) | - | 1589973..1591550 (-) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| FOC31_RS07310 (FOC31_07310) | - | 1591963..1592415 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| FOC31_RS07315 (FOC31_07315) | purB | 1592726..1594171 (-) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| FOC31_RS07320 (FOC31_07320) | - | 1594315..1595223 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| FOC31_RS07325 (FOC31_07325) | - | 1595480..1596304 (+) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| FOC31_RS07330 (FOC31_07330) | lepB | 1596344..1596874 (+) | 531 | WP_009889108.1 | signal peptidase I | - |
| FOC31_RS07335 (FOC31_07335) | - | 1596956..1598737 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| FOC31_RS07340 (FOC31_07340) | rny | 1599372..1600913 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| FOC31_RS07345 (FOC31_07345) | recA | 1601089..1602135 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| FOC31_RS07350 (FOC31_07350) | pgsA | 1602423..1602965 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| FOC31_RS07355 (FOC31_07355) | rimO | 1602952..1604286 (-) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| FOC31_RS07360 (FOC31_07360) | mnmH | 1604280..1605338 (-) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| FOC31_RS07365 (FOC31_07365) | - | 1605341..1607752 (-) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| FOC31_RS07370 (FOC31_07370) | - | 1607875..1608609 (-) | 735 | WP_003428224.1 | ClpP family protease | - |
| FOC31_RS07375 (FOC31_07375) | dapG | 1608722..1609945 (-) | 1224 | WP_009889103.1 | aspartate kinase | - |
| FOC31_RS07380 (FOC31_07380) | - | 1609955..1610200 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| FOC31_RS07385 (FOC31_07385) | - | 1610235..1611482 (-) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| FOC31_RS07390 (FOC31_07390) | - | 1611640..1612383 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| FOC31_RS07395 (FOC31_07395) | pnp | 1612649..1614760 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| FOC31_RS07400 (FOC31_07400) | - | 1614885..1615730 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| FOC31_RS07405 (FOC31_07405) | rpsO | 1615970..1616227 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| FOC31_RS07415 (FOC31_07415) | - | 1616331..1617260 (-) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FOC31_RS07420 (FOC31_07420) | truB | 1617391..1618296 (-) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| FOC31_RS07425 (FOC31_07425) | - | 1618309..1619292 (-) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| FOC31_RS07430 (FOC31_07430) | rbfA | 1619273..1619653 (-) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| FOC31_RS07435 (FOC31_07435) | infB | 1619696..1621636 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| FOC31_RS07440 (FOC31_07440) | - | 1621658..1621969 (-) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| FOC31_RS07445 (FOC31_07445) | rnpM | 1621959..1622240 (-) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| FOC31_RS07450 (FOC31_07450) | nusA | 1622247..1623401 (-) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| FOC31_RS07455 (FOC31_07455) | rimP | 1623431..1623892 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| FOC31_RS07460 (FOC31_07460) | - | 1624096..1628394 (-) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| FOC31_RS07465 (FOC31_07465) | acd | 1628609..1630432 (-) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| FOC31_RS07470 (FOC31_07470) | - | 1630647..1631384 (+) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| FOC31_RS07475 (FOC31_07475) | - | 1631504..1631824 (+) | 321 | WP_003428248.1 | MazG-like family protein | - |
| FOC31_RS07480 (FOC31_07480) | - | 1631999..1632139 (-) | 141 | WP_003419462.1 | hypothetical protein | - |
| FOC31_RS07485 (FOC31_07485) | - | 1632408..1633076 (+) | 669 | WP_009892970.1 | YwaF family protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=402643 FOC31_RS07345 WP_003428218.1 1601089..1602135(-) (recA) [Clostridioides difficile strain FDAARGOS_723]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=402643 FOC31_RS07345 WP_003428218.1 1601089..1602135(-) (recA) [Clostridioides difficile strain FDAARGOS_723]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.