Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC51_RS11885 Genome accession   NZ_CP046311
Coordinates   2367818..2368918 (-) Length   366 a.a.
NCBI ID   WP_060785117.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain FDAARGOS_743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362818..2373918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC51_RS11870 (FOC51_11870) - 2364107..2364769 (+) 663 WP_005718635.1 YigZ family protein -
  FOC51_RS11875 (FOC51_11875) - 2364804..2365961 (-) 1158 WP_005718634.1 glycosyltransferase family 4 protein -
  FOC51_RS11880 (FOC51_11880) rny 2366065..2367702 (-) 1638 WP_005718633.1 ribonuclease Y -
  FOC51_RS11885 (FOC51_11885) recA 2367818..2368918 (-) 1101 WP_060785117.1 recombinase RecA Machinery gene
  FOC51_RS11890 (FOC51_11890) pgsA 2369111..2369671 (-) 561 WP_005718631.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC51_RS11895 (FOC51_11895) - 2369689..2370768 (-) 1080 WP_005722712.1 helix-turn-helix domain-containing protein -
  FOC51_RS11900 (FOC51_11900) ymfI 2370836..2371564 (-) 729 WP_005718629.1 elongation factor P 5-aminopentanone reductase -
  FOC51_RS11905 (FOC51_11905) - 2371578..2372822 (-) 1245 WP_005718628.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39624.04 Da        Isoelectric Point: 6.3297

>NTDB_id=402554 FOC51_RS11885 WP_060785117.1 2367818..2368918(-) (recA) [Lactobacillus crispatus strain FDAARGOS_743]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKSSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEEHPDIYQDIQ
KQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKEAATDKKSEQAK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=402554 FOC51_RS11885 WP_060785117.1 2367818..2368918(-) (recA) [Lactobacillus crispatus strain FDAARGOS_743]
ATGGCCAAAGACGAAAAACAGGCTGCTTTAGATGCAGCGCTTAAAAAAATCGAAAAGAATTTCGGTAAGGGTGCTGTAAT
GCGGATGGGCGAAAAAGCTGATACGCAAATTTCAACAGTGCCAACAGGTTCATTAGCTTTAGATGCTGCTATCGGTGTAG
GTGGATATCCTCGTGGTCGTATTATTGAAGTTTATGGCCCAGAATCATCTGGTAAGACTACGGTAGCCCTTCATGCTGTA
GCTGAGGTGCAAAAGCGTGGTGGTACTGCAGCATATATTGATGCCGAAAATGCAATGGATCCTGCTTACGCTGAAGCTTT
AGGTGTAGATATTGATTCACTAATTTTGTCACAACCTAATACTGGTGAAGAAGGTTTGCAAATCGCTGATACTTTGATTT
CCAGTGGGGCAATTGACATTGTAGTAGTCGACTCTGTTGCTGCCTTAGTACCACGAGCAGAAATTGAAGGCGAGATGGGA
GATGCCCATGTTGGTTTACAAGCGAGATTAATGAGTCAAGCTTTGCGTAAGTCATCAGGTAATATTTCTAAAACCAAAAC
TATTGCCATCTTTATTAACCAGATTCGTGAAAAAGTTGGGGTAATGTTTGGTAATCCTGAAACTACCCCAGGTGGTCGTG
CTCTTAAGTTTTACTCAACTATTAGATTGGAAGTAAGAAGAGCTGAACAGATTAAGCAATCAGGAGATGTTCTTGGTAAC
AGAGTTAAAATTAAAGTTGTTAAGAACAAGGTTGCTCCACCATTTAAGGTGGCAGAAGTAGACATTATGTACGGTAAGGG
AATTTCACAAAGTGGTGAATTACTGGACATGGCTGCTGATAAGGACATTATCGATAAAGCAGGTTCTTGGTACTCTTACA
AGAGTGATCGAATTGGTCAGGGACGTGAGAATGCTAAGAAGTATCTAGAAGAGCATCCAGATATTTATCAAGATATCCAA
AAGCAAGTGCGTCAAGCTTACGGGATTGATGAAAAGTCAATTGCTGATCGTGAAGATCCAGAAAAGATCAAGGAGAAGCG
CGAAGAAGCCAAGACAGAAAAAGAAGCTGCTACAGATAAAAAGTCTGAACAAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.967

90.437

0.732
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

90.164

0.658
  recA Streptococcus pneumoniae D39

65.278

98.361

0.642
  recA Streptococcus pneumoniae R6

65.278

98.361

0.642
  recA Streptococcus pneumoniae TIGR4

65.278

98.361

0.642
  recA Streptococcus pneumoniae Rx1

65.278

98.361

0.642
  recA Streptococcus mutans UA159

63.562

99.727

0.634
  recA Streptococcus mitis NCTC 12261

67.251

93.443

0.628
  recA Streptococcus pyogenes NZ131

68.693

89.891

0.617
  recA Streptococcus mitis SK321

68.085

89.891

0.612
  recA Lactococcus lactis subsp. cremoris KW2

65.465

90.984

0.596
  recA Neisseria gonorrhoeae MS11

58.79

94.809

0.557
  recA Neisseria gonorrhoeae MS11

58.79

94.809

0.557
  recA Neisseria gonorrhoeae strain FA1090

58.79

94.809

0.557
  recA Acinetobacter baumannii D1279779

56.936

94.536

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.817

92.623

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.451

89.617

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

88.251

0.527
  recA Acinetobacter baylyi ADP1

59.627

87.978

0.525
  recA Helicobacter pylori 26695

55.848

93.443

0.522
  recA Helicobacter pylori strain NCTC11637

55.848

93.443

0.522
  recA Pseudomonas stutzeri DSM 10701

59.19

87.705

0.519
  recA Glaesserella parasuis strain SC1401

52.991

95.902

0.508
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.143

87.978

0.503
  recA Vibrio cholerae strain A1552

57.143

87.978

0.503
  recA Ralstonia pseudosolanacearum GMI1000

58.147

85.519

0.497

Multiple sequence alignment