Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HIPMA_RS01255 Genome accession   NC_015318
Coordinates   243258..244274 (+) Length   338 a.a.
NCBI ID   WP_013681269.1    Uniprot ID   F2LXN9
Organism   Hippea maritima DSM 10411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 238258..249274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIPMA_RS01230 (Hipma_0243) - 238530..239984 (+) 1455 WP_013681264.1 NADH-quinone oxidoreductase subunit N -
  HIPMA_RS01235 (Hipma_0244) - 240065..241231 (+) 1167 WP_013681265.1 aspartate aminotransferase family protein -
  HIPMA_RS01240 (Hipma_0245) - 241228..241689 (+) 462 WP_013681266.1 phosphatidylglycerophosphatase A -
  HIPMA_RS08985 (Hipma_0246) - 241686..242702 (+) 1017 WP_013681267.1 CinA family protein -
  HIPMA_RS01250 (Hipma_0247) thpR 242699..243256 (+) 558 WP_013681268.1 RNA 2',3'-cyclic phosphodiesterase -
  HIPMA_RS01255 (Hipma_0248) recA 243258..244274 (+) 1017 WP_013681269.1 recombinase RecA Machinery gene
  HIPMA_RS01260 (Hipma_0249) - 244264..245337 (+) 1074 WP_013681270.1 PilT/PilU family type 4a pilus ATPase -
  HIPMA_RS01265 (Hipma_0250) - 245340..245795 (+) 456 WP_013681271.1 regulatory protein RecX -
  HIPMA_RS01270 (Hipma_0251) alaS 245782..248364 (+) 2583 WP_013681272.1 alanine--tRNA ligase -
  HIPMA_RS01275 (Hipma_0252) - 248377..248643 (+) 267 WP_013681273.1 hypothetical protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36617.09 Da        Isoelectric Point: 6.1638

>NTDB_id=40241 HIPMA_RS01255 WP_013681269.1 243258..244274(+) (recA) [Hippea maritima DSM 10411]
MNDKKLQSLNMAISKIEKMFGKGALMKLGDVKAVDVNVIPTGILSLDYALGVCGIPRGRIIEIYGQESSGKTTLALHCIA
AAQREGGLAAFVDAEHALDVYYAEKLGVDVDNLLVSQPDSGEQALEIIDTLIRSNAVDLIVVDSVAALVPQAEIEGDMGD
AHVGLQARLMSQALRKLTGAISKSNTSIIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRMEIRKSGSPIKQGSEAVGN
RVKVKVVKNKVAPPFKEAEFDILYGVGVDKIGDLLDLAVAHDIVEKSGSWFSYNNERLGQGRDNAKEFLKGRGDLLEEIE
RKLRNELNCRPKGETNES

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=40241 HIPMA_RS01255 WP_013681269.1 243258..244274(+) (recA) [Hippea maritima DSM 10411]
ATGAATGATAAAAAACTTCAATCACTAAATATGGCTATCTCTAAAATAGAAAAGATGTTTGGTAAGGGTGCCTTAATGAA
ACTTGGCGATGTGAAAGCTGTAGATGTGAATGTTATACCTACAGGGATCTTATCTTTAGATTATGCTCTAGGTGTTTGCG
GTATTCCAAGGGGTAGGATCATAGAGATATACGGCCAAGAGTCGAGCGGTAAAACTACATTAGCTTTGCATTGCATAGCT
GCAGCCCAAAGAGAGGGGGGGTTAGCGGCTTTTGTTGATGCTGAGCATGCATTGGATGTATACTATGCTGAAAAGCTTGG
TGTAGATGTTGATAATTTGCTTGTTAGCCAGCCCGATTCAGGAGAGCAAGCACTTGAAATTATAGATACACTCATCAGAA
GTAATGCCGTGGATTTGATAGTTGTGGACTCAGTGGCAGCTTTAGTGCCTCAGGCTGAGATTGAAGGCGATATGGGAGAC
GCCCATGTGGGGTTGCAGGCCAGACTAATGAGTCAGGCTCTGAGAAAACTCACCGGAGCTATAAGTAAGTCCAATACATC
AATTATTTTCTTGAATCAGATAAGAATGAAGATAGGCGTTATGTTTGGAAACCCAGAAACAACAACCGGTGGAAATGCTT
TAAAGTTTTATTCTTCAATAAGAATGGAGATAAGAAAGAGTGGATCTCCTATAAAACAGGGAAGTGAGGCTGTTGGAAAC
AGGGTTAAGGTAAAGGTTGTCAAGAATAAAGTAGCACCCCCATTTAAAGAGGCTGAGTTTGATATACTCTACGGTGTGGG
TGTGGATAAGATAGGGGATTTGCTTGATTTGGCTGTTGCTCACGATATTGTTGAAAAGAGTGGCTCATGGTTTTCTTACA
ACAATGAGAGATTAGGGCAAGGTAGGGATAATGCTAAGGAGTTTTTAAAGGGAAGAGGGGATTTGCTTGAGGAAATAGAG
AGAAAACTCAGGAATGAATTGAACTGTAGACCAAAAGGAGAGACTAATGAGAGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2LXN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.881

99.112

0.633
  recA Ralstonia pseudosolanacearum GMI1000

67.296

94.083

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

64.198

95.858

0.615
  recA Neisseria gonorrhoeae MS11

63.692

96.154

0.612
  recA Neisseria gonorrhoeae MS11

63.692

96.154

0.612
  recA Neisseria gonorrhoeae strain FA1090

63.692

96.154

0.612
  recA Vibrio cholerae strain A1552

62.997

96.746

0.609
  recA Pseudomonas stutzeri DSM 10701

62.997

96.746

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

96.746

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

97.041

0.607
  recA Acinetobacter baumannii D1279779

62.691

96.746

0.607
  recA Acinetobacter baylyi ADP1

60.597

99.112

0.601
  recA Helicobacter pylori 26695

61.585

97.041

0.598
  recA Helicobacter pylori strain NCTC11637

61.28

97.041

0.595
  recA Glaesserella parasuis strain SC1401

59.878

97.337

0.583
  recA Streptococcus mitis SK321

58.036

99.408

0.577
  recA Streptococcus mitis NCTC 12261

58.036

99.408

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

95.266

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.883

93.787

0.571
  recA Streptococcus pyogenes NZ131

58.841

97.041

0.571
  recA Streptococcus pneumoniae TIGR4

58.769

96.154

0.565
  recA Streptococcus pneumoniae D39

58.769

96.154

0.565
  recA Streptococcus pneumoniae R6

58.769

96.154

0.565
  recA Streptococcus pneumoniae Rx1

58.769

96.154

0.565
  recA Streptococcus mutans UA159

56.047

100

0.562
  recA Lactococcus lactis subsp. cremoris KW2

57.764

95.266

0.55

Multiple sequence alignment