Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GKD17_RS05310 Genome accession   NZ_CP046176
Coordinates   1364439..1365482 (-) Length   347 a.a.
NCBI ID   WP_007837333.1    Uniprot ID   A0A076IPI6
Organism   Phocaeicola dorei strain DSM 17855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359439..1370482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKD17_RS05300 (GKD17_05345) - 1361792..1363411 (+) 1620 WP_007837331.1 RagB/SusD family nutrient uptake outer membrane protein -
  GKD17_RS05305 (GKD17_05350) - 1363656..1364252 (+) 597 WP_007837332.1 DUF4923 family protein -
  GKD17_RS05310 (GKD17_05355) recA 1364439..1365482 (-) 1044 WP_007837333.1 recombinase RecA Machinery gene
  GKD17_RS05315 (GKD17_05360) bcp 1365495..1365941 (-) 447 WP_007837334.1 thioredoxin-dependent thiol peroxidase -
  GKD17_RS05320 (GKD17_05365) - 1366017..1367210 (-) 1194 WP_007842483.1 saccharopine dehydrogenase family protein -
  GKD17_RS05325 (GKD17_05370) - 1367294..1368547 (-) 1254 WP_007837341.1 hypothetical protein -
  GKD17_RS05330 (GKD17_05375) - 1368672..1369463 (+) 792 WP_007837344.1 META domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37304.52 Da        Isoelectric Point: 4.8819

>NTDB_id=401827 GKD17_RS05310 WP_007837333.1 1364439..1365482(-) (recA) [Phocaeicola dorei strain DSM 17855]
MAKKDNEEIPFSAAPGAGNSEKLKALQAAMDKIEKTFGKGSIMKMGDDNVQEVEVIPTGSIALNAALGVGGYPKGRIIEI
YGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGEQALEIAEQLIRSSAIDIIVID
SVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLD
IRRSTQLKDGEEVIGNQTKVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGRDA
SKQVIQDNPELAEELEGLIFAALKEQE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=401827 GKD17_RS05310 WP_007837333.1 1364439..1365482(-) (recA) [Phocaeicola dorei strain DSM 17855]
ATGGCAAAAAAAGATAACGAAGAAATTCCATTCTCAGCAGCTCCAGGTGCCGGAAATAGTGAAAAACTGAAAGCACTGCA
AGCTGCAATGGATAAGATAGAGAAAACTTTTGGTAAAGGCTCTATCATGAAAATGGGTGATGACAACGTACAGGAAGTGG
AAGTGATTCCTACCGGGTCTATCGCCTTGAACGCCGCATTAGGGGTAGGCGGCTATCCCAAAGGTAGAATCATAGAAATT
TATGGTCCCGAATCATCCGGTAAGACTACATTGGCTATCCATGCCATTGCTGAAGCTCAGAAGGCAGGCGGCATTGCAGC
TTTCATTGATGCCGAACATGCTTTCGACCGTTTCTATGCGGCCAAACTGGGAGTGGATGTAGATAACTTATGGATATCAC
AACCCGATAACGGTGAGCAGGCACTTGAAATTGCTGAGCAGCTAATACGATCATCCGCTATTGATATCATTGTTATCGAC
TCTGTCGCGGCATTGACTCCAAAAGCTGAGATTGAAGGAGATATGGGTGATAACAAAGTAGGTTTACAAGCGCGTTTGAT
GTCTCAGGCTTTGCGTAAGCTTACGTCAGCCATCAGCAAAACCAATACAACTTGTATTTTTATCAACCAGTTGCGTGAAA
AAATCGGTGTCATGTTTGGTAATCCAGAAACAACTACCGGTGGTAATGCTCTGAAATTCTATGCTTCCGTACGTTTGGAT
ATCCGTCGCTCCACTCAACTGAAAGATGGTGAAGAAGTAATCGGCAACCAGACTAAAGTAAAAGTAGTGAAAAACAAAGT
GGCACCTCCTTTCCGTAAAGCCGAATTCGATATCATGTTTGGTGAAGGTATCTCAAGAGCTGGTGAAATCATTGATTTGG
GTGCTGATTTAGGCATCATCAAGAAAAGCGGTTCATGGTACAGCTACAACGAAACCAAACTGGGACAAGGACGTGACGCT
TCCAAACAAGTGATTCAGGATAACCCCGAACTGGCGGAAGAACTGGAAGGTTTGATTTTCGCAGCACTGAAAGAGCAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A076IPI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.687

95.677

0.686
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.296

91.643

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.049

93.372

0.617
  recA Neisseria gonorrhoeae MS11

66.049

93.372

0.617
  recA Neisseria gonorrhoeae MS11

66.049

93.372

0.617
  recA Streptococcus mitis NCTC 12261

62.647

97.983

0.614
  recA Streptococcus mitis SK321

62.647

97.983

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

68.269

89.914

0.614
  recA Streptococcus pneumoniae D39

62.059

97.983

0.608
  recA Streptococcus pneumoniae TIGR4

62.059

97.983

0.608
  recA Streptococcus pneumoniae Rx1

62.059

97.983

0.608
  recA Streptococcus pneumoniae R6

62.059

97.983

0.608
  recA Streptococcus pyogenes NZ131

61.404

98.559

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.079

87.608

0.605
  recA Glaesserella parasuis strain SC1401

65.823

91.066

0.599
  recA Helicobacter pylori strain NCTC11637

64.78

91.643

0.594
  recA Helicobacter pylori 26695

64.78

91.643

0.594
  recA Pseudomonas stutzeri DSM 10701

63.077

93.66

0.591
  recA Acinetobacter baylyi ADP1

63.863

92.507

0.591
  recA Acinetobacter baumannii D1279779

64.762

90.778

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.551

99.424

0.582
  recA Streptococcus mutans UA159

63.125

92.219

0.582
  recA Lactococcus lactis subsp. cremoris KW2

61.162

94.236

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.175

90.778

0.573
  recA Vibrio cholerae strain A1552

63.175

90.778

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.18

92.795

0.568

Multiple sequence alignment