Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GKC68_RS05400 Genome accession   NZ_CP046137
Coordinates   1014076..1015146 (+) Length   356 a.a.
NCBI ID   WP_028723209.1    Uniprot ID   A0AAJ1CZS7
Organism   Pantoea sp. RSPAM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1009076..1020146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC68_RS05380 (GKC68_05355) mltB 1010934..1012016 (+) 1083 WP_028723212.1 lytic murein transglycosylase B -
  GKC68_RS05385 (GKC68_05360) - 1012090..1012425 (+) 336 WP_014605175.1 zinc ribbon domain-containing protein YjdM -
  GKC68_RS05390 (GKC68_05365) tam 1012609..1013385 (+) 777 WP_206115842.1 trans-aconitate 2-methyltransferase -
  GKC68_RS05395 (GKC68_05370) pncC 1013486..1013980 (+) 495 WP_028723210.1 nicotinamide-nucleotide amidase -
  GKC68_RS05400 (GKC68_05375) recA 1014076..1015146 (+) 1071 WP_028723209.1 recombinase RecA Machinery gene
  GKC68_RS05405 (GKC68_05380) - 1015260..1015772 (+) 513 WP_014594422.1 regulatory protein RecX -
  GKC68_RS05410 (GKC68_05385) alaS 1015904..1018531 (+) 2628 WP_028723208.1 alanine--tRNA ligase -
  GKC68_RS05415 (GKC68_05390) csrA 1018782..1018967 (+) 186 WP_006120718.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37990.44 Da        Isoelectric Point: 4.8722

>NTDB_id=401557 GKC68_RS05400 WP_028723209.1 1014076..1015146(+) (recA) [Pantoea sp. RSPAM1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGKANAGNFLKENPAVAEEI
DIKLREMLLNGGDQNIAADEAGNDVENAASEANEDY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=401557 GKC68_RS05400 WP_028723209.1 1014076..1015146(+) (recA) [Pantoea sp. RSPAM1]
ATGGCAATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTCGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATTTCAACGGGTTCTCTGTCACTGGATATCGCATTAGGTG
CGGGCGGTTTACCGATGGGACGTATCGTTGAGATCTACGGCCCAGAGGCCTCAGGTAAAACGACACTGACACTTCAGGTT
ATTGCCGCCGCGCAGCGTAAGGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCACTGGATCCCATCTATGCTAAGAA
ACTGGGCGTAGATATCGACAATCTGCTGTGTTCACAGCCGGATACCGGTGAGCAGGCCCTGGAAATTTGTGATGCGCTGG
CCCGCTCTGGTGCCGTTGACGTCATTATCGTTGACTCCGTAGCCGCGCTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCACATATGGGCCTGGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCTAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ATGCGCTGAAGTTCTACGCTTCTGTTCGCCTTGATATTCGCCGTATTGGTGCGATTAAAGAGGGCGACAACGTGGTGGGT
AGTGAAACGCGTGTTAAAGTCGTTAAGAACAAAATTGCGGCGCCATTTAAGCAGGCTGAGTTCCAGATTATGTACGGCGA
GGGCATTAACACCTTCGGTGAGCTGGTGGATCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAAAGGCGATAAGATCGGTCAGGGCAAGGCAAACGCCGGCAACTTCCTCAAAGAAAATCCCGCAGTGGCCGAAGAGATA
GATATCAAACTGCGTGAAATGCTGCTTAACGGTGGCGATCAAAACATCGCGGCGGACGAGGCAGGCAACGACGTTGAGAA
TGCGGCGAGCGAAGCCAACGAAGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.235

98.034

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.235

98.034

0.806
  recA Pseudomonas stutzeri DSM 10701

74.924

91.854

0.688
  recA Acinetobacter baylyi ADP1

71.681

95.225

0.683
  recA Acinetobacter baumannii D1279779

73.03

92.697

0.677
  recA Glaesserella parasuis strain SC1401

66.952

98.596

0.66
  recA Neisseria gonorrhoeae MS11

66.667

94.382

0.629
  recA Neisseria gonorrhoeae MS11

66.667

94.382

0.629
  recA Neisseria gonorrhoeae strain FA1090

66.667

94.382

0.629
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Helicobacter pylori strain NCTC11637

62.691

91.854

0.576
  recA Helicobacter pylori 26695

62.385

91.854

0.573
  recA Streptococcus mitis SK321

62.848

90.73

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.539

90.73

0.567
  recA Streptococcus pneumoniae Rx1

62.229

90.73

0.565
  recA Streptococcus pneumoniae TIGR4

62.229

90.73

0.565
  recA Streptococcus pneumoniae R6

62.229

90.73

0.565
  recA Streptococcus pneumoniae D39

62.229

90.73

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

89.607

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.169

0.562
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Streptococcus pyogenes NZ131

61.538

91.292

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.647

95.506

0.551

Multiple sequence alignment