Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GKC13_RS09305 Genome accession   NZ_CP046134
Coordinates   1799947..1801116 (-) Length   389 a.a.
NCBI ID   WP_179970786.1    Uniprot ID   A0A3G6K0W2
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794947..1806116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS09300 (GKC13_09415) spx 1799372..1799770 (-) 399 WP_207559723.1 transcriptional regulator Spx -
  GKC13_RS09305 (GKC13_09420) recA 1799947..1801116 (-) 1170 WP_179970786.1 recombinase RecA Machinery gene
  GKC13_RS09310 (GKC13_09425) cinA 1801152..1802423 (-) 1272 WP_011680605.1 competence/damage-inducible protein A Machinery gene
  GKC13_RS09315 (GKC13_09430) - 1802519..1803073 (-) 555 WP_011680604.1 DNA-3-methyladenine glycosylase I -
  GKC13_RS09320 (GKC13_09435) ruvA 1803080..1803670 (-) 591 WP_011680603.1 Holliday junction branch migration protein RuvA -
  GKC13_RS09325 (GKC13_09440) - 1803874..1805443 (+) 1570 Protein_1817 IS3-like element ISSth1b family transposase -
  GKC13_RS09330 (GKC13_09445) - 1805508..1805729 (-) 222 WP_002949052.1 hypothetical protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 42042.61 Da        Isoelectric Point: 4.6661

>NTDB_id=401543 GKC13_RS09305 WP_179970786.1 1799947..1801116(-) (recA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFAEIDHKVRVHYGLVELDEDDVVEDTQVEDTQVEDTQVEDTSDELILDLDSTIEIEE

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=401543 GKC13_RS09305 WP_179970786.1 1799947..1801116(-) (recA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAGTTTGGTGATGAGCGTCGCAAAGCACTCGACGATGCATT
AAAAAACATTGAAAAAGATTTTGGTAAGGGTGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAAAAAGTTCAGGTTATGA
GCTCAGGCTCACTAGCTTTGGATATTGCTCTTGGTGCGGGTGGTTACCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTTGCCCTTCATGCAGTTGCTCAGACTCAAAAAGAAGGTGGCATCGCAGCTTTTATCGA
TGCCGAGCATGCTCTTGACCCTGCGTATGCAGCAGCTCTAGGTGTTAATATCGATGAGCTTCTTTTGTCGCAGCCTGATT
CTGGTGAGCAAGGTCTCGAAATTGCAGGTAAGCTGATTGACTCTGGTGCAGTGGATTTAGTTGTTGTTGACTCAGTTGCG
GCCTTGGTACCACGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTAGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAACTTTCTGCATCTATTAATAAAACAAAAACGATTGCTATCTTTATTAACCAGTTGCGTGAAAAAGTTGGTA
TCATGTTTGGTAACCCAGAGACTACCCCAGGTGGACGTGCTTTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGT
AATACACAAATTAAAGGAACCGGTGACAAAAAGGACCAAAATGTTGGTAAGGAAACCAAGATTAAGGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAGAAGCTTTTGTTGAAATTATGTATGGCGAAGGAATTTCACAAACCGGTGAACTTGTAAAAA
TTGCAAGTGATATAGGCATTATTCAGAAAGCCGGAGCTTGGTTCTCATATAATGGGGAGAAAATTGGTCAAGGATCTGAA
AATGCTAAAAAGTATTTAGCAGATCACCCTGAGATTTTTGCAGAAATCGATCATAAAGTACGCGTACACTACGGTCTGGT
TGAGCTAGATGAGGACGATGTTGTTGAAGATACACAAGTTGAAGATACACAAGTTGAAGACACACAAGTTGAAGACACGT
CTGATGAACTCATTCTAGATCTTGATTCAACCATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6K0W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.923

100

0.871
  recA Streptococcus pyogenes NZ131

86.889

100

0.869
  recA Streptococcus mitis SK321

84.536

99.743

0.843
  recA Streptococcus mitis NCTC 12261

84.536

99.743

0.843
  recA Streptococcus pneumoniae Rx1

84.021

99.743

0.838
  recA Streptococcus pneumoniae D39

84.021

99.743

0.838
  recA Streptococcus pneumoniae R6

84.021

99.743

0.838
  recA Streptococcus pneumoniae TIGR4

84.021

99.743

0.838
  recA Lactococcus lactis subsp. cremoris KW2

77.62

90.746

0.704
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

88.946

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

84.576

0.573
  recA Neisseria gonorrhoeae MS11

59.827

88.946

0.532
  recA Neisseria gonorrhoeae MS11

59.827

88.946

0.532
  recA Neisseria gonorrhoeae strain FA1090

59.827

88.946

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.177

87.147

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

83.033

0.519
  recA Glaesserella parasuis strain SC1401

59.412

87.404

0.519
  recA Acinetobacter baylyi ADP1

62.154

83.548

0.519
  recA Acinetobacter baumannii D1279779

62.154

83.548

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

83.548

0.512
  recA Vibrio cholerae strain A1552

61.231

83.548

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.598

87.661

0.496
  recA Pseudomonas stutzeri DSM 10701

58.462

83.548

0.488
  recA Ralstonia pseudosolanacearum GMI1000

57.576

84.833

0.488
  recA Helicobacter pylori strain NCTC11637

56.667

84.833

0.481
  recA Helicobacter pylori 26695

56.667

84.833

0.481

Multiple sequence alignment