Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HMPREF9243_RS06535 Genome accession   NC_015278
Coordinates   1393058..1394173 (-) Length   371 a.a.
NCBI ID   WP_013669682.1    Uniprot ID   F2I5Q4
Organism   Aerococcus sp. Group     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388058..1399173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9243_RS06520 (HMPREF9243_1383) - 1388763..1390043 (+) 1281 WP_013669166.1 ISL3 family transposase -
  HMPREF9243_RS06525 (HMPREF9243_1384) - 1390669..1390902 (-) 234 WP_013669771.1 LPXTG cell wall anchor domain-containing protein -
  HMPREF9243_RS06530 (HMPREF9243_1386) rny 1391202..1392773 (-) 1572 WP_013669186.1 ribonuclease Y -
  HMPREF9243_RS06535 (HMPREF9243_1387) recA 1393058..1394173 (-) 1116 WP_013669682.1 recombinase RecA Machinery gene
  HMPREF9243_RS06540 (HMPREF9243_1388) - 1394255..1395493 (-) 1239 WP_013669019.1 competence/damage-inducible protein A -
  HMPREF9243_RS06545 (HMPREF9243_1389) pgsA 1395545..1396123 (-) 579 WP_013668694.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HMPREF9243_RS06550 (HMPREF9243_1390) - 1396369..1398576 (-) 2208 WP_231286949.1 DNA translocase FtsK -
  HMPREF9243_RS06555 (HMPREF9243_1391) - 1398877..1399155 (+) 279 WP_013668490.1 acylphosphatase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40078.80 Da        Isoelectric Point: 4.3539

>NTDB_id=40154 HMPREF9243_RS06535 WP_013669682.1 1393058..1394173(-) (recA) [Aerococcus sp. Group]
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPDIFK
EIDSKVRAEYGFGPAVEDDDSEDETTNEEAKNDSSSDEENETLDLFNDDEE

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=40154 HMPREF9243_RS06535 WP_013669682.1 1393058..1394173(-) (recA) [Aerococcus sp. Group]
ATGAGTACATCACATGATGCAAACCGCCAAAAGGCTTTAGACCAGGCCCTTAAACAAATTGAAAAAAACTTTGGTAAGGG
AGCTATAATGAAGATGGGAGAATCAACGGATACTCAGGTGTCGACTGTTCCGTCAGGCTCCTTATCCTTAGATATTGCCC
TGGGAGTCGGAGGTTATCCGCGTGGACGAATTATTGAAGTCTACGGTCCAGAATCTTCTGGGAAAACCACTGTTGCCCTA
CATGCTGTTGCCGAGGTTCAAAAACAAGGTGGAATTGCTGCCTTTATTGATGCTGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTGGGAGTTGACATTGATGAGCTATTACTCTCCCAACCAGATACTGGTGAACAAGGGCTAGAAATTGCTGATG
CCTTAGTGTCCTCTGGTGCGATTGATATTGTCGTTGTCGATTCTGTTGCTGCCTTAGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGACTCCCATGTGGGGCTCCAAGCTCGGTTGATGTCTCAAGCCCTACGGAAGTTATCGGGCTCCATTAATAA
GACGAAAACCATTGCCATGTTTATTAACCAGATCCGTGAAAAAGTAGGTGTCATGTTTGGTAACCCAGAAACCACTCCAG
GGGGACGGGCCCTAAAATTTTATTCCACTATTCGTCTAGAAGTTAGACGCGGGGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACTAAGATTAAAGTAGTAAAAAATAAGGTAGCTCCGCCATTTAAGGTCGCTGAAGTGGATATTATGTA
TGGGCAAGGAATTTCTCAAGCGGGTGAATTAGTTGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGCTCTTGGT
ATTCTTACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCCAAACTATATCTCACCGAAAACCCTGACATATTTAAG
GAAATTGATAGTAAGGTTCGAGCAGAGTATGGTTTTGGTCCAGCTGTTGAAGATGACGATTCAGAGGATGAAACAACCAA
TGAAGAAGCCAAAAACGATTCATCAAGTGATGAAGAAAATGAAACCCTAGATTTATTTAACGATGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2I5Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.645

91.914

0.741
  recA Bacillus subtilis subsp. subtilis str. 168

77.914

87.871

0.685
  recA Streptococcus pneumoniae D39

68.785

97.574

0.671
  recA Streptococcus pneumoniae R6

68.785

97.574

0.671
  recA Streptococcus pneumoniae TIGR4

68.785

97.574

0.671
  recA Streptococcus pneumoniae Rx1

68.785

97.574

0.671
  recA Streptococcus mitis NCTC 12261

67.209

99.461

0.668
  recA Streptococcus mitis SK321

66.938

99.461

0.666
  recA Streptococcus mutans UA159

67.867

97.305

0.66
  recA Streptococcus pyogenes NZ131

72.783

88.14

0.642
  recA Lactococcus lactis subsp. cremoris KW2

68.497

93.261

0.639
  recA Neisseria gonorrhoeae strain FA1090

63.45

92.183

0.585
  recA Neisseria gonorrhoeae MS11

63.45

92.183

0.585
  recA Neisseria gonorrhoeae MS11

63.45

92.183

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.848

88.949

0.577
  recA Acinetobacter baylyi ADP1

60.933

92.453

0.563
  recA Acinetobacter baumannii D1279779

61.29

91.914

0.563
  recA Glaesserella parasuis strain SC1401

58.841

92.992

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

89.757

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.792

0.544
  recA Vibrio cholerae strain A1552

62.733

86.792

0.544
  recA Ralstonia pseudosolanacearum GMI1000

62.857

84.906

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.31

92.183

0.528
  recA Pseudomonas stutzeri DSM 10701

59.259

87.332

0.518
  recA Helicobacter pylori strain NCTC11637

58.41

88.14

0.515
  recA Helicobacter pylori 26695

58.41

88.14

0.515

Multiple sequence alignment