Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJV39_RS01905 Genome accession   NZ_CP046114
Coordinates   381771..382889 (-) Length   372 a.a.
NCBI ID   WP_016527507.1    Uniprot ID   A0A6I5WMI7
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 376771..387889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS01855 (GJV39_01855) ubiK 378106..378366 (-) 261 WP_010786182.1 ubiquinone biosynthesis accessory factor UbiK -
  GJV39_RS01880 (GJV39_01880) aroE 379051..379869 (-) 819 WP_010786181.1 shikimate dehydrogenase -
  GJV39_RS01885 (GJV39_01885) - 379873..380427 (-) 555 WP_010786180.1 Sua5/YciO/YrdC/YwlC family protein -
  GJV39_RS01890 (GJV39_01890) - 380427..380957 (-) 531 WP_021109872.1 type I DNA topoisomerase -
  GJV39_RS01895 (GJV39_01895) yqfB 380965..381270 (-) 306 WP_016527509.1 N(4)-acetylcytidine aminohydrolase -
  GJV39_RS01900 (GJV39_01900) recX 381263..381718 (-) 456 WP_016527508.1 recombination regulator RecX -
  GJV39_RS01905 (GJV39_01905) recA 381771..382889 (-) 1119 WP_016527507.1 recombinase RecA Machinery gene
  GJV39_RS01910 (GJV39_01910) - 383022..383627 (-) 606 WP_005713082.1 aminotransferase class IV family protein -
  GJV39_RS01915 (GJV39_01915) - 383605..384576 (-) 972 WP_005713081.1 aminodeoxychorismate synthase component I -
  GJV39_RS01920 (GJV39_01920) - 384609..384803 (+) 195 Protein_360 cation transporter -
  GJV39_RS01925 (GJV39_01925) tehB 385027..385890 (+) 864 WP_005713077.1 SAM-dependent methyltransferase TehB -
  GJV39_RS01930 (GJV39_01930) dusA 386166..387137 (+) 972 WP_035498455.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40299.98 Da        Isoelectric Point: 4.7535

>NTDB_id=401131 GJV39_RS01905 WP_016527507.1 381771..382889(-) (recA) [Glaesserella parasuis strain SCW0912]
MAENKKSSKNNTVIKQVPPEQKQQALDAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=401131 GJV39_RS01905 WP_016527507.1 381771..382889(-) (recA) [Glaesserella parasuis strain SCW0912]
ATGGCTGAGAATAAAAAATCTTCAAAAAACAATACCGTCATTAAACAAGTTCCACCAGAACAGAAACAACAAGCCTTAGA
TGCGGCACTAGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTAGGGCAGACTGAGCAATTAGATATTG
AGTCTGTTTCAACAGGCTCACTAGGGCTAGACCTTGCTTTAGGTATTGGTGGCTTGCCAATGGGGCGTATTGTTGAAATC
TATGGGCCAGAATCGTCAGGTAAGACAACATTAACACTTTCTTTAATTGCTCAAGCTCAAAAAGGCAATAAAACCTGTGC
TTTTATTGACGCTGAACACGCTTTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACAGATGATTTATTGATTTCTC
AACCAGATAATGGTGAACAAGCTCTTGAAATCTGTGATGCGTTAGTTCGTTCAGGGGCAGTTGATGTTATTATTGTGGAC
TCTGTCGCTGCACTTACGCCAAAAGCTGAAATTGAAGGGGATATGGGCGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTCACTGCAAATATCAAAAATACCAACTGTTTAGTGGTCTTTATTAACCAAATCCGTATGA
AAATTGGCGTAATGTTTGGTAATCCAGAAACGACAACAGGCGGTAATGCATTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGCGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACCAAAGTAAAAGTGGTGAAAAACAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGAATTTCTCGTATGAACGAACTACTGATTTTAG
CTGAAGCAAACGGCTTTATTAAGAAATCAGGGGCGTGGTTCTCTTATGATGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCCTGAAATTGCAGATAAACTCGAACAAGAAATCCGAAATACACTGGCTTCAAACCC
AAATAGCCTATTAAAAGTAACGGCAAGCGACAGTATCGACGAGAGCGATGTCGAAGAGTTTAACGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I5WMI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

97.581

100

0.976
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Vibrio cholerae strain A1552

69.231

94.355

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

94.355

0.653
  recA Acinetobacter baylyi ADP1

69.298

91.935

0.637
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Neisseria gonorrhoeae strain FA1090

71.118

86.559

0.616
  recA Ralstonia pseudosolanacearum GMI1000

68.389

88.441

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

89.247

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

87.634

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

86.828

0.554
  recA Streptococcus mitis NCTC 12261

60.588

91.398

0.554
  recA Streptococcus pneumoniae R6

60.058

92.204

0.554
  recA Streptococcus pneumoniae Rx1

60.058

92.204

0.554
  recA Streptococcus pneumoniae D39

60.058

92.204

0.554
  recA Streptococcus pneumoniae TIGR4

60.058

92.204

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.121

88.71

0.551
  recA Streptococcus mutans UA159

60

91.398

0.548
  recA Streptococcus mitis SK321

60

91.398

0.548
  recA Streptococcus pyogenes NZ131

59.118

91.398

0.54
  recA Helicobacter pylori 26695

61.28

88.172

0.54
  recA Helicobacter pylori strain NCTC11637

60.976

88.172

0.538
  recA Lactococcus lactis subsp. cremoris KW2

56.977

92.473

0.527
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

86.29

0.519

Multiple sequence alignment